Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi903g00010 ATGGAGCACTCACGGGGAATTATTTGGGCCTTTTTAACCGCTCCACTTCAGCCTGCTGGTTTCTGGGGTGGAAGAGATGGTGAAGAAATGGAGAACTTGAAGCTGGCTAATGGTGAAAACTATCAAGTTTGGATAGAGTTTGAGAATTCACATCTTAATGTTTCTATGGCCCCAGCAGGGAAAAGGAAGCCTCAAAGGCCTTTGATTAGTAAGCCTATTAACCTTTCTGGGGTTTTGTTGGATGAAATGTATGTGGGATTTTCTGGATCAACAGGGAGAATGGTGGACGTTTGTAGAATTCTTGCTTGGAGTTTTAGCCATTCAAACTTTTCAATTGGTGATGCTCTGCAGACCAAACATTTGCCCTTGTATGTGCATCCAAAGGCATTGATGTTTAGATCAAAGGGTTTCATTTTCGGTGTCATTTTTGGTGCGGTGTGTTTCATTGGTTGCTGCATTTTGGTGTTTTGCAGTTTGTCCAGAACCAGAAGGGAAGAGAAAGAGGAAAAAACTGAAGATTGGGAATTGGAGTATTGGCCACATAGGATTAACTATCAGGAGATTTGTGCTGCAACAAGCGGATTCTCTGAGGAGAAAGTGATTGGGATTGGAACAAGTGGGAAAGTATATAAAGGGATTTTGAAAGGAGTAGAAGAAGTTGCAGTGAAGAGAATCAATCATGACACTAAGCATGGAATGAGAGAGTTTCTGGCAGAGATTTCAAGCCTAGGCAGAATGAAACACAGAAATTTAGTGGGTTTCAGAGGTTGGAGTAAAAGCAAAGGAGGAAAATTGATACTTGTTTATGATTACATGGAGAATGGGAGCTTGGACAAAAGGATCTTTGAGTGTGAAGAGACCATGCTGCTGAGCTGGGAAGAAAGAATTAAAGTTCTACAAAACGTGGCTTGTGGAATTTTATATCTACATGAGGGTTGGGAATTTGAGGTCTTACATAGAGACATCAAAGCAGGTAATGTACTACTTGACAAGGATATGAATGCCAGATTGGGAGATTTTGGGCTTGCAAGGTTGCATCACCAGGAACATGTGGTTGACACAACAAGAGTAATAGGGACTTTGGGGTACATGGCACCAGAACTAGTCCGAGTTGGGAGACCATCAACTGCAACTGATGTGTATAGTTTTGGAATATTGGTTTTAGAAGTTGTATGTGGGAGAAGACCCATTGTAACAGATAAGCCACCATTGGTTGACTTGGTATTTTCCCTTATGGAGAGAAGGGAATTGAGTTGTGCCATTGATGAGCGTTTGAAGGCTCAAAGTGGTTATTATAATAACACTGAGGAAGCTAAGAGACTGCTTCATTTGGGTATGTTATGTGCAAGTTTAGACCCTTGTGTTAGGCCAACAATGAGGCAGGTAGTGAAAGCTTTGGAGGAAATAAAATGCAATGAGTGTAACGAAGACTGCATTCATATGGGTCTGCTTGGAAAAATAAACTCAGCAGCATCGTGGTCTAGGAGTTCTCCAAATTCTGCCCATGTAAATTATCTTACTTTTGATGAGATTTTGCAGACCAAATTTTATTCTACGGCATCTTTAAGCATCTCTTGTCCCAGCCCACAGCCAGAGCCAGATTTTGTTTCAGAAGGAAGGTGA 1623 0.414 MEHSRGIIWAFLTAPLQPAGFWGGRDGEEMENLKLANGENYQVWIEFENSHLNVSMAPAGKRKPQRPLISKPINLSGVLLDEMYVGFSGSTGRMVDVCRILAWSFSHSNFSIGDALQTKHLPLYVHPKALMFRSKGFIFGVIFGAVCFIGCCILVFCSLSRTRREEKEEKTEDWELEYWPHRINYQEICAATSGFSEEKVIGIGTSGKVYKGILKGVEEVAVKRINHDTKHGMREFLAEISSLGRMKHRNLVGFRGWSKSKGGKLILVYDYMENGSLDKRIFECEETMLLSWEERIKVLQNVACGILYLHEGWEFEVLHRDIKAGNVLLDKDMNARLGDFGLARLHHQEHVVDTTRVIGTLGYMAPELVRVGRPSTATDVYSFGILVLEVVCGRRPIVTDKPPLVDLVFSLMERRELSCAIDERLKAQSGYYNNTEEAKRLLHLGMLCASLDPCVRPTMRQVVKALEEIKCNECNEDCIHMGLLGKINSAASWSRSSPNSAHVNYLTFDEILQTKFYSTASLSISCPSPQPEPDFVSEGR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi903g00010 540 CDD STKc_IRAK 201 469 - -
Gabi903g00010 540 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 215 IPR013320 -
Gabi903g00010 540 FunFam L-type lectin-domain containing receptor kinase S.4 272 477 - -
Gabi903g00010 540 SUPERFAMILY Protein kinase-like (PK-like) 173 468 IPR011009 -
Gabi903g00010 540 SMART serkin_6 195 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi903g00010 540 Gene3D - 19 126 - -
Gabi903g00010 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Gabi903g00010 540 ProSiteProfiles Protein kinase domain profile. 195 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi903g00010 540 Gene3D Transferase(Phosphotransferase) domain 1 272 482 - -
Gabi903g00010 540 Gene3D Phosphorylase Kinase; domain 1 156 271 - -
Gabi903g00010 540 Pfam Haspin like kinase domain 285 352 - -
Gabi903g00010 540 PANTHER - 30 468 - -
Gabi903g00010 540 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 157 271 - -
Gabi903g00010 540 Pfam Legume lectin domain 30 109 IPR001220 GO:0030246
Gabi903g00010 540 ProSitePatterns Protein kinases ATP-binding region signature. 201 223 IPR017441 GO:0005524
Gabi903g00010 540 Pfam Protein kinase domain 196 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi903g00010 Gabi-Chr903 77460 79894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi903g00010 19 414 Receptor kinase-like Gene Family AT4G04960 56.965 5.60e-146 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi903g00010 Pkinase 8.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi903g00010 - - gmx:100804025 853.203