Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi903g00009 ATGTCTCCTCGTATGTGTTTCTTCCTCCTCGTACTTAACAAAACTCTTGTACTTCTAAGTTCAGTCTCAGCAACTGAATTTGTGTATAACAGAAACTTCAACTCCACCAACTTGAAGCTCTATGGGAATGCCACCATCCAAAACTCAGTTCTTACTCTCACAAACGAAACCTTTTTCTCCATTGGTCGTGCCTTTTACCCTTACAGAATACCTGTGAAACCGCCAAACTCTTCAAACCCTCTTCCCTTTGCAACCTCTTTCATCTTCTCCATTGCTCCTTGTAAGAATTTCCTTGTTGCTCATGGTTTTGCTTTCATGTTCTCGCCTCTGATGGCCATAAATGGAGCACTCACGGGGAATTATTTGGGCCTTTTTAACCGCTCCACTTCAGGTAATTCTTCCAACCATGTTTTTGCTGTTGAGTTTGATGATTTTAGAAATGAGGAGTTCAATGAACAAAATGATAATCATGTGGGGGTTGACTTGAATTCAATGATTTCTACTTATTCGGAGCCTGCTGGTTTCTGGGGTGGAAGAGATGGTGAAGAAATGGAGAACTTGAAGCTGGCTAATGGTGAAAACTATCAAGTTTGGATAGAGTTTGAGAATTCACATCTTAATGTTTCTATGGCCCCAGCAGGGAAAAGGAAGCCTCAAAGGCCTTTGATTAGTAAGCCTATTAACCTTTCTGGGGTTTTGTTGGATGAAATGTATGTGGGATTTTCTGGATCAACAGGGAGAATGGTGGACGTTTGTAGAATTCTTGCTTGGAGTTTTAGCCATTCAAACTTTTCAATTGGTGATGCTCTGCAGACCAAACATTTGCCCTTGTATGTGCATCCAAAGGCATTGATGTTTAGATCAAAGGGTTTCATTTTCGGTGTCATTTTTGGTGCGGTGTGTTTCATTGGTTGCTGCATTTTGGTGTTTTGCAGTTTGTCCAGAACCAGAAGGGAAGAGAAAGAGGAAAAAACTGAAGATTGGGAATTGGAGTATTGGCCACATAGGATTAACTATCAGGAGATTTGTGCTGCAACAAGCGGATTCTCTGAGGAGAAAGTGATTGGGATTGGAACAAGTGGGAAAGTATATAAAGGGATTTTGAAAGGAGTAGAAGAAGTTGCAGTGAAGAGAATCAATCATGACACTAAGCATGGAATGAGAGAGTTTCTGGCAGAGATTTCAAGCCTAGGCAGAATGAAACACAGAAATTTAGTGGGTTTCAGAGGTTGGAGTAAAAGCAAAGGAGGAAAATTGATACTTGTTTATGATTACATGGAGAATGGGAGCTTGGACAAAAGGATCTTTGAGTGTGAAGAGACCATGCTGCTGAGCTGGGAAGAAAGAATTAAAGTTCTACAAAACGTGGCTTGTGGAATTTTATATCTACATGAGGGTTGGGAATTTGAGGTCTTACATAGAGACATCAAAGCAGGTAATGTACTACTTGACAAGGATATGAATGCCAGATTGGGAGATTTTGGGCTTGCAAGGTTGCATCACCAGGAACATGTGGTTGACACAACAAGAGTAATAGGGACTTTGGGGTACATGGCACCAGAACTAGTCCGAGTTGGGAGACCATCAACTGCAACTGATGTGTATAGTTTTGGAATATTGGTTTTAGAAGTTGTATGTGGGAGAAGACCCATTGTAACAGATAAGCCACCATTGGTTGACTTGGTATTTTCCCTTATGGAGAGAAGGGAATTGAGTTGTGCCATTGATGAGCGTTTGAAGGCTCAAAGTGGTTATTATAATAACACTGAGGAAGCTAAGAGACTGCTTCATTTGGGTATGTTATGTGCAAGTTTAGACCCTTGTGTTAGGCCAACAATGAGGCAGGTAGTGAAAGCTTTGGAGGAAATAAAATGCAATGAGTGTAACGAAGACTGCATTCATATGGGTCTGCTTGGAAAAATAAACTCAGCAGCATCGTGGTCTAGGAGTTCTCCAAATTCTGCCCATGTAAATTATCTTACTTTTGATGAGATTTTGCAGACCAAATTTTATTCTACGGCATCTTTAAGCATCTCTTGTCCCAGCCCACAGCCAGAGCCAGATTTTGTTTCAGAAGGAAGGTGA 2085 0.4101 MSPRMCFFLLVLNKTLVLLSSVSATEFVYNRNFNSTNLKLYGNATIQNSVLTLTNETFFSIGRAFYPYRIPVKPPNSSNPLPFATSFIFSIAPCKNFLVAHGFAFMFSPLMAINGALTGNYLGLFNRSTSGNSSNHVFAVEFDDFRNEEFNEQNDNHVGVDLNSMISTYSEPAGFWGGRDGEEMENLKLANGENYQVWIEFENSHLNVSMAPAGKRKPQRPLISKPINLSGVLLDEMYVGFSGSTGRMVDVCRILAWSFSHSNFSIGDALQTKHLPLYVHPKALMFRSKGFIFGVIFGAVCFIGCCILVFCSLSRTRREEKEEKTEDWELEYWPHRINYQEICAATSGFSEEKVIGIGTSGKVYKGILKGVEEVAVKRINHDTKHGMREFLAEISSLGRMKHRNLVGFRGWSKSKGGKLILVYDYMENGSLDKRIFECEETMLLSWEERIKVLQNVACGILYLHEGWEFEVLHRDIKAGNVLLDKDMNARLGDFGLARLHHQEHVVDTTRVIGTLGYMAPELVRVGRPSTATDVYSFGILVLEVVCGRRPIVTDKPPLVDLVFSLMERRELSCAIDERLKAQSGYYNNTEEAKRLLHLGMLCASLDPCVRPTMRQVVKALEEIKCNECNEDCIHMGLLGKINSAASWSRSSPNSAHVNYLTFDEILQTKFYSTASLSISCPSPQPEPDFVSEGR 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi903g00009 694 Pfam Protein kinase domain 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi903g00009 694 CDD STKc_IRAK 355 623 - -
Gabi903g00009 694 SMART serkin_6 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi903g00009 694 Pfam Legume lectin domain 25 263 IPR001220 GO:0030246
Gabi903g00009 694 ProSiteProfiles Protein kinase domain profile. 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi903g00009 694 Gene3D - 23 273 - -
Gabi903g00009 694 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 311 425 - -
Gabi903g00009 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Gabi903g00009 694 CDD lectin_legume_LecRK_Arcelin_ConA 25 260 IPR001220 GO:0030246
Gabi903g00009 694 SUPERFAMILY Protein kinase-like (PK-like) 327 622 IPR011009 -
Gabi903g00009 694 FunFam L-type lectin-domain containing receptor kinase S.4 426 631 - -
Gabi903g00009 694 FunFam L-type lectin-domain containing receptor kinase S.4 23 267 - -
Gabi903g00009 694 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 266 IPR013320 -
Gabi903g00009 694 PANTHER - 42 622 - -
Gabi903g00009 694 Gene3D Phosphorylase Kinase; domain 1 310 425 - -
Gabi903g00009 694 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Gabi903g00009 694 Gene3D Transferase(Phosphotransferase) domain 1 426 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi903g00009 Gabi-Chr903 77460 80238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi903g00009 22 568 Receptor kinase-like Gene Family AT4G04960 55.235 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi903g00009 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi903g00009 - - gmx:100804025 1109.75