LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi903g00008	ATGTCTCCACTTAAGCTCCTTGACCTTGTCATTCTTCTTCACACTATAACCACTCTGAGTTCAGTTTCCACTACTGAATTTGTCTATAATACAAACTTCAACTCCACAAACATCATTCTATATGGAAATGCCACTACTCAGACCTCCATTCTGACTCTCACTAATAACAGTTTCTTCTCCATAGGCCGTGCTTTTTACCCTCAAAAAATACCTATGAAACCAGCCAACTCTTCCACCTTTCTCCCCTTTGCAACCTCCTTCATTTTCTCTGTTGCCCCCATTAAAAACTTTATGAGTGGTCATGGCTTTGCCTTCATATTCACACCATCACGAGGTGTAAATGGCACGACCTCAAATGAGTATCTTGGTCTTTTCAACTTCAGCAATGAAGGTAATCCTCAGAACCATGTTGTTGGAGTTGAGTTTGATACAATAAGAAATATAGAATTCAACGATATGAATGACAATCATGTTGGTGTTGACATAAACTCGCTTACTTCCTTAACTTCACATGAGGCTGGCTATTGGGGTGGTAAAGATGACAAGGAATTTAAGGTGCTGAAGATAAAAAATGGAGAAAATTATCAAGTATGGATTGAGTTTATAAATTCCCAGCTTAACATTACTATGGCTAGAGCGGGACAAAAGAGACCAAGAGTGCCTCTTATCAGTAGGAATGTTAACCTTTCTGGGATTCTTATGGATGAAACGTACGTTGGGTTCTGTGCAGCAACAGGGAGGATAATAGACAGTACTAGGATTCTTGCTTGGAGTTTTAGTAATTCAAATTTTTCAATTGGTGATGCTTTAATGACAGACAATTTGCCCTCTTTTGTCCTTCATAAAGGGTGGTTTTCTGGAGCACGAGCTTTAGTTGTAGGGGTCACCAGTGCTGTCTCTGTGTTAATCATTGCTTGTGGTTATGTAGTGTTTTACATTCTCTGCAGGGGAAACAAGGCTGAGGAAGAAATTGAAGACTGGGAACTGGAGTACTGGCCCCATAGAATTAGTTTCCCTGAGATTGATGCAGCAACAAGGGGGTTCTCTGAAGAGAATGTGGTTGCTGTAGGAGGGAATGGGAAGGTTTATAAAGGGGTTTTGCAAGGAATAGAAGTTGCAGTCAAGAGAATCCCTCAGGAAAGAGAAGAAGGGATGAGAGAGTTTTTGGCTGAGATTTCAAGCCTAGGCAGAATGAAACACAGAAATTTAGTAGGATTGAGAGGTTGGTGCAAAAAAGAAAAGGGAAATTTGATTCTAGTTTATGACTTCATGAACAATGGAAGTTTAGATAAAAGGATCTTTGAGTGTGAAGAGAGAAAGATGCTAACTTGGGAAGAGAGGATTGAAGTTTTGAAAAATGTAGCCGCAGGGATTCTATATCTGCATGAGGGTTGGGAAGTTAAGGTCTTACATAGGGACATCAAAGCAAGCAATGTTCTACTTGACAAGGACATGAATGCTAGGTTGGGGGATTTTGGATTGGCTCGTATGCATGATCATCATGGACAAGTGGCTAGCACAACAAGAGTAATAGGGACAGTAGGATACATTGCTCCTGAAGTAATTAGAACAGGAACAACATCAACTCTGTCTGATGTGTTTGGTTTTGGAATATTGGTGTTGGAAGTAATTTGTGGGAGACGACCTATTGAAGAACATAAACCAGGGCTTATTGAATGGGTGATGTCCCTAATGGTGCTTGGCCAATTGCACAGTGCTGTTGATGCAAGGTTGAAGGCTAAGGGGGAATACACCATTGAGGAAGCTGAGAGATTGCTTCATTTGGGTTTACTATGTTCAAATTCAGACCCTAGTATTAGACCAACGATGAGACAGGTTGTGAAAATGCTGCAGGGGGAAATGGAAGGGGTTGAGTCTGATGAAGAAATCATGGAGATGAGTTTGCTTGGAAAAATAAAATCAGCTGCTATGTGGTCTAAATCTGAATGTAGTTTTCCATATAAAGGTCACCCTACTTTTGATGAAATTAGGATGTTCAGTGTTAATTCTACTACGTCTAGAAGTGAATCAGGTACCATTCCAGGATCAGAATCAGATATCATCCGAGAAGGCAGGTAA	2079	0.4045	MSPLKLLDLVILLHTITTLSSVSTTEFVYNTNFNSTNIILYGNATTQTSILTLTNNSFFSIGRAFYPQKIPMKPANSSTFLPFATSFIFSVAPIKNFMSGHGFAFIFTPSRGVNGTTSNEYLGLFNFSNEGNPQNHVVGVEFDTIRNIEFNDMNDNHVGVDINSLTSLTSHEAGYWGGKDDKEFKVLKIKNGENYQVWIEFINSQLNITMARAGQKRPRVPLISRNVNLSGILMDETYVGFCAATGRIIDSTRILAWSFSNSNFSIGDALMTDNLPSFVLHKGWFSGARALVVGVTSAVSVLIIACGYVVFYILCRGNKAEEEIEDWELEYWPHRISFPEIDAATRGFSEENVVAVGGNGKVYKGVLQGIEVAVKRIPQEREEGMREFLAEISSLGRMKHRNLVGLRGWCKKEKGNLILVYDFMNNGSLDKRIFECEERKMLTWEERIEVLKNVAAGILYLHEGWEVKVLHRDIKASNVLLDKDMNARLGDFGLARMHDHHGQVASTTRVIGTVGYIAPEVIRTGTTSTLSDVFGFGILVLEVICGRRPIEEHKPGLIEWVMSLMVLGQLHSAVDARLKAKGEYTIEEAERLLHLGLLCSNSDPSIRPTMRQVVKMLQGEMEGVESDEEIMEMSLLGKIKSAAMWSKSECSFPYKGHPTFDEIRMFSVNSTTSRSESGTIPGSESDIIREGR	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi903g00008	692	SUPERFAMILY	Protein kinase-like (PK-like)	324	617	IPR011009	-
	Gabi903g00008	692	SMART	serkin_6	348	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi903g00008	692	ProSiteProfiles	Protein kinase domain profile.	348	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi903g00008	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Gabi903g00008	692	Gene3D	Phosphorylase Kinase; domain 1	314	423	-	-
	Gabi903g00008	692	PANTHER	-	43	621	-	-
	Gabi903g00008	692	ProSitePatterns	Legume lectins beta-chain signature.	138	144	IPR019825	-
	Gabi903g00008	692	Gene3D	Transferase(Phosphotransferase) domain 1	424	636	-	-
	Gabi903g00008	692	FunFam	L-type lectin-domain containing receptor kinase S.4	424	630	-	-
	Gabi903g00008	692	Pfam	Protein kinase domain	352	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi903g00008	692	MobiDBLite	consensus disorder prediction	671	692	-	-
	Gabi903g00008	692	FunFam	L-type lectin-domain containing receptor kinase S.4	23	267	-	-
	Gabi903g00008	692	CDD	lectin_legume_LecRK_Arcelin_ConA	25	262	IPR001220	GO:0030246
	Gabi903g00008	692	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	310	423	-	-
	Gabi903g00008	692	Gene3D	-	23	272	-	-
	Gabi903g00008	692	Pfam	Legume lectin domain	25	263	IPR001220	GO:0030246
	Gabi903g00008	692	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	264	IPR013320	-
	Gabi903g00008	692	CDD	STKc_IRAK	357	619	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi903g00008	Gabi-Chr903	73590	75705	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi903g00008	22	565	Receptor kinase-like Gene Family	AT4G04960	55.914	0.0	608

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi903g00008		Pkinase	1.2e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi903g00008	-		-	gmx:100804553	1156.74