Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi903g00007 ATGGGTTGCATAACTTCCAAGAGTTCAGCTGTAGAAGACAGCAGGGAAGGTTTGACAAAGGAATTGACATCATCTAGCAAAAGGACCTCAGAGATGAATGTTTCACGATTGAATTCTAAGAAAAGGGTCGATGGAGTTTGGGGGAAAGATAAGTTCTTGGATGGTGTTGATATGAAAGTTTCATTAATTGACAAGAAAGGAAATGGCTCAGTGCGGTTGTATGATGATCAAAATGGGAAGAAGAAAATGGAGAAACCCGAATTGAGTGTTCTTGATTATCCTGGTCTTGGAAGGGTTCCAAAGGCTTCAGAAGGAGAACAAGTTGCAGCAGGATGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCCAGGGGTGGATACCACGGAGTGCTAATACTTTTGAGAGGTTTTATAAAATTGGCCAAGGAACTTACAGTACTGTTTATAAGGCACGAGATGTGGCTCACCAAAAGATCGTTGCCTTGAAGAGGGTTCGCTTTGATAATCTTGACCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGCTGGAAGGCTTGATAACATCACAGACATCTCGTAGCTTGTACCTTGTTCTTGAATATATGGAACATGACCTTACAGGACTTGCATCAGGTCCTGGCATTAAGTTTTCTGAACCACAGGTTAAATGCTACATGCAGCAGCTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCATCTTAAAGATTGCAGATTTTGGCTTGGCAAATTTTTTTGACCCCCATCATGGTGTTCCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTTGGAGCATCTGATTATGGAGCTGCAGTGGATTTGTGGAGCGCTGGTTGCATACTGGGGGAACTATATTGTGGCAGGCCCATATTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAAGATTTTTAAACTTTGTGGCTCACCATCTGAGGACTATTGGCGTAAACTGCGGTTGCAACATTCAACCATATTCAGGCCTCCACACCAATATAGGCGTTGTGTTGCAGAAACATTTAAAGAATATCCATCTACTGCCATGAGGCTTATAGAGACCCTACTTTCCGTAGATCCTGCACTTCGAGGAACAACAGCTACAGCTCTGAAGAGTGAGTTCTTTTCATCGGAACCTCTTGCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAAGAGATTGACACTAAATTGCGGGAAGAAGCAACAAGAAGGCAAGGACCTGTTGGGGGAAAGGAGCAAAAAGTTGGACCAGGAGTTAGACAAGAGAAAGAACCTGGGGCATTTGTCTTATCCAAAGACAATGCTGACTCCCGCACATCAATTCAGCAAGGGCAACGACTTTCAAACTCAAAGAGCCGGATTAAATTTTTCAATCCTCACAGAGAACCTGCGTCTGGATTTTTTGATTTTCGACACAAACAGTCAGAAGATATTAAAGAAATGGAAAATTATTTCTCTGGGCCTCTTATAAAGGGGCCTTCACATTCAGGTCCCTTGGTTCCAGGTTCTGGCTGGGAAAAGGTTGGAAAGGAAGCTGGTCAGTGGCTTCCTGTTTCAAACAAAGTCAACCTATCAAAACTATCTGGTTTAATGGCATCTAGGACTTTGCCCTTTGGAGATCAAGAAGAAAACCAAGTTCCGCTGAGGCCCCGAGAAACAATTCAAGTACAAAAGTCTTTGGAGTCAACTAATGGAACAGAGTCAAGAAGAAGGCATGATGAAAAACGCCAGTCTCAGAGAATTGATCTCAGTCAAATAGAAAATGGAAAGGTCTCTGCTGAAACATTGATTCAGGATGGACATGGGTCCAAGGAAAACAAGATCTATCTCTCTGGTCCATTACTGGTTTCAGCAAACAATATGGATCAGATGCTCAAAGAGCATGATCGAAAGATCCAGGAATATTCAAGACGAGCACGGATTGACAAGTCTAAAGGTGAAAAGGTTTGTGTGCATCAAAATTAG 2106 0.4274 MGCITSKSSAVEDSREGLTKELTSSSKRTSEMNVSRLNSKKRVDGVWGKDKFLDGVDMKVSLIDKKGNGSVRLYDDQNGKKKMEKPELSVLDYPGLGRVPKASEGEQVAAGWPTWLSSVAGEAIQGWIPRSANTFERFYKIGQGTYSTVYKARDVAHQKIVALKRVRFDNLDPESVKFMAREILVLRRLDHPNVIKLEGLITSQTSRSLYLVLEYMEHDLTGLASGPGIKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLANFFDPHHGVPLTSRVVTLWYRPPELLLGASDYGAAVDLWSAGCILGELYCGRPILPGKTEVEQLHKIFKLCGSPSEDYWRKLRLQHSTIFRPPHQYRRCVAETFKEYPSTAMRLIETLLSVDPALRGTTATALKSEFFSSEPLACDPSSLPKYPPSKEIDTKLREEATRRQGPVGGKEQKVGPGVRQEKEPGAFVLSKDNADSRTSIQQGQRLSNSKSRIKFFNPHREPASGFFDFRHKQSEDIKEMENYFSGPLIKGPSHSGPLVPGSGWEKVGKEAGQWLPVSNKVNLSKLSGLMASRTLPFGDQEENQVPLRPRETIQVQKSLESTNGTESRRRHDEKRQSQRIDLSQIENGKVSAETLIQDGHGSKENKIYLSGPLLVSANNMDQMLKEHDRKIQEYSRRARIDKSKGEKVCVHQN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi903g00007 701 MobiDBLite consensus disorder prediction 447 468 - -
Gabi903g00007 701 MobiDBLite consensus disorder prediction 600 634 - -
Gabi903g00007 701 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi903g00007 701 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Gabi903g00007 701 Pfam Protein kinase domain 136 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi903g00007 701 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Gabi903g00007 701 CDD STKc_CDK9_like 135 419 - -
Gabi903g00007 701 MobiDBLite consensus disorder prediction 1 36 - -
Gabi903g00007 701 SUPERFAMILY Protein kinase-like (PK-like) 128 425 IPR011009 -
Gabi903g00007 701 Gene3D Phosphorylase Kinase; domain 1 129 222 - -
Gabi903g00007 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Gabi903g00007 701 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Gabi903g00007 701 Coils Coil 665 685 - -
Gabi903g00007 701 Gene3D Transferase(Phosphotransferase) domain 1 223 455 - -
Gabi903g00007 701 PANTHER CELL DIVISION PROTEIN KINASE 133 424 - -
Gabi903g00007 701 MobiDBLite consensus disorder prediction 611 628 - -
Gabi903g00007 701 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi903g00007 Gabi-Chr903 65639 71541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi903g00007 127 452 Core Cell Cycle Gene Families AT5G10270 49.284 2.29e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi903g00007 Pkinase 9.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi903g00007 - K08819 gmx:100775462 1101.66