Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi903g00002 ATGGAGCCTCTGCTGAAAGGTGAAAGTAGTGACCAGAGGTACCGTTCGCGGGGGATACGTGGTCGCACCGATGCTATCACCTACGGCTCCAACTACGAGAAAGCCGCTGCACTCATCGATCTGGCTGAAGATGGTGTTGGTCTCCCTGTGCAAATTCTTGACTCATCAAGCTTTCAAAGTTATGCAAGATTTTATTTTATATTCACTAAATGCAATCTCATCTGGTCTCTTGGTTATTTTGCTTTGATAGTCCTGAATTTCTTTGAGAAACCTTTATGGTGTGAAAGAAATAGCACACATTCTTGCAACGATAGAGAGTATTTCTTTTTGGGACAGTTGCCATATCTAACTGCTGCAGAATGTCTTATTTATGAGGGAATAATTCTTATTTTACTTATCATACATACTTTCTTCCCAATATCATACGAAGGGTCCGGTATATATTGGAAACGAGCTATTAATCAATTGAAGGTCTTCTGTTTATTAGTTCTCGTTGCTGATATGCTGGTTTATGCTCTTTTTATGTCTCCGCTGGCCTTTGATTTTCTACCATTCAGAATTGCACCATATATCAGGGTTGTTCTTTTCGTTTTGAATATTAGTTGGGTGGCTTACGTGATGTTTGAAGATACAATACAGGGGAAAACAGTATTCACTTCCTATGGTACTACGTTGTGCCAGATGTTTATTTTATTTACCACATCCAATAATCCAGATGTTTGGGTTCCCGCATACAAGGCTTCGCGCTGGTATTGCATTTTTTTCATTCTCTTTGTGCTGGTGGGGGTTTACTTTGTTACAAATTTGGTCCTTGCCGTTGTTTATGAGAGTTTCAAGAGTCAGCTTGTCAAACAAGTTTTTGAGATGGATCGTATGAGAAGAACTATGTTGGAGAAAGCTTTTGTTCTCTTAGATACAAATAATGTTGGATCTCTTAACAAAAATCAATGCATTAGGCTCTTTGAGGAGTTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGGGAAGAATTTGAGTTGATATTTGATGAGCTGGATGATAGTCATGATGTAAAGATAAACAAGGATGAATTTGCTGATATTTGTAATGCCATTGCTTTAAAATTCCAGAAGGAGGATACTCTGTCTTACTTAGAGTATTTAGCATTCTACAATTCATCTACCTCAAAAAGATTGAAAGCCTTCGTGAAGAGCCCCATGTTTGGGTACCTGGTGTCCTTCATTCTCATACTGAATCTGGCTGCTGTTATTATTGAGACAACGCTTGATATAGAAAACAATTCTGCTCAAAAGGTGTGGCAAGTGGTTGAGTTCATTTTTGGGTGGATATACGTAATAGAAATGGTTCTAAAGGTTTATTCATATGGATTTGAGAACTATTGGCGGGATGGTTCAAATCGCTTTGATTTTATTATCACATTGATAATTGTCATTGGAGAAACTATAACTTTTGCTTCACCTGATGGTCTACTTTTTTTCTCAAATGGAGAATGGATTCGATATCTCCTCCTTGCTAGAATGTTGAGATTGATAAGGCTCCTAATGCATGTCAAGCGATACCGAGGCTTTGTGGCAACTTTCTTAACTCTTATACCCAGCTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGTATTTATTGCTCACTTGGTGTACAGATTTTTGGTGGAATCGTTAATGCTGGAAACCCTGAATTGGAAGCAACAAGCCTTGCTGATAATGACTATTTGCTTTTTAATTTCAATGATTATCCAAATGGAATGGTGACACTTTTCAATATGCTAGTCCTGGGAATCTGGGAAGAAGTGATGCAGAGCTACCAGGAGTTAACTGGGACTTTTTGGACCAATGCGTACTTCATTAGCTTCTACTTAATAACTGTTTTGCTGCTTCTGAATTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTCGCTGAAATGGAGCTTGAGTCGTCAGAAACTTGTGATGGAAATGACAAGGAAGTTGAAGGATATAAATATCGACGGCGATCTATTGGCACAAAAACACGAAGTCAGAGGGTTGATGTTCTTCTTCATCATATGTTGAGTGCTGAGTTGGGTCAAACTCAGCCTTCCAATCCATAA 2109 0.386 MEPLLKGESSDQRYRSRGIRGRTDAITYGSNYEKAAALIDLAEDGVGLPVQILDSSSFQSYARFYFIFTKCNLIWSLGYFALIVLNFFEKPLWCERNSTHSCNDREYFFLGQLPYLTAAECLIYEGIILILLIIHTFFPISYEGSGIYWKRAINQLKVFCLLVLVADMLVYALFMSPLAFDFLPFRIAPYIRVVLFVLNISWVAYVMFEDTIQGKTVFTSYGTTLCQMFILFTTSNNPDVWVPAYKASRWYCIFFILFVLVGVYFVTNLVLAVVYESFKSQLVKQVFEMDRMRRTMLEKAFVLLDTNNVGSLNKNQCIRLFEELNKYRTLPKISREEFELIFDELDDSHDVKINKDEFADICNAIALKFQKEDTLSYLEYLAFYNSSTSKRLKAFVKSPMFGYLVSFILILNLAAVIIETTLDIENNSAQKVWQVVEFIFGWIYVIEMVLKVYSYGFENYWRDGSNRFDFIITLIIVIGETITFASPDGLLFFSNGEWIRYLLLARMLRLIRLLMHVKRYRGFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPELEATSLADNDYLLFNFNDYPNGMVTLFNMLVLGIWEEVMQSYQELTGTFWTNAYFISFYLITVLLLLNLVVAFVLEAFFAEMELESSETCDGNDKEVEGYKYRRRSIGTKTRSQRVDVLLHHMLSAELGQTQPSNP 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi903g00002 702 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Gabi903g00002 702 Gene3D - 279 362 - -
Gabi903g00002 702 Gene3D - 148 278 - -
Gabi903g00002 702 Gene3D - 390 523 IPR027359 -
Gabi903g00002 702 SMART efh_1 337 365 IPR002048 GO:0005509
Gabi903g00002 702 SMART efh_1 296 324 IPR002048 GO:0005509
Gabi903g00002 702 FunFam Two pore calcium channel protein 1 178 282 - -
Gabi903g00002 702 Gene3D - 524 680 - -
Gabi903g00002 702 SUPERFAMILY EF-hand 289 369 IPR011992 -
Gabi903g00002 702 Pfam Ion transport protein 149 281 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi903g00002 702 Pfam Ion transport protein 399 645 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi903g00002 702 FunFam Two pore calcium channel protein 1 391 523 - -
Gabi903g00002 702 CDD EFh 296 361 IPR002048 GO:0005509
Gabi903g00002 702 SUPERFAMILY Voltage-gated potassium channels 398 644 - -
Gabi903g00002 702 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 194 698 IPR044581 GO:0005245
Gabi903g00002 702 FunFam Two pore calcium channel protein 1 524 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi903g00002 Gabi-Chr903 1570 32122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi903g00002 1 701 Ion Channels AT4G03560 64.529 0.0 985
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi903g00002 K16900 - gmx:100806160 1129.01