Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi903g00001 ATGGAGCCTCTGCTGAAAGGTGAAAGTAGTGACCAGAGGTACCGTTCGCGGGGGATACGTGGTCGCACCGATGCTATCACCTACGGCTCCAACTACGAGAAAGCCGCTGCACTCATCGATCTGGCTGAAGATGGTGTTGGTCTCCCTGTGCAAATTCTTGACTCATCAAGCTTTCAAAGTTATGCAAGATTTTATTTTATATTCACTAAATGCAATCTCATCTGGTCTCTTGGTTATTTTGCTTTGATAGTCCTGAATTTCTTTGAGAAACCTTTATGGTGTGAAAGAAATAGCACACATTCTTGCAACGATAGAGAGTATTTCTTTTTGGGACAGTTGCCATATCTAACTGCTGCAGAATGTCTTATTTATGAGGGAATAATTCTTATTTTACTTATCATACATACTTTCTTCCCAATATCATACGAAGGGTCCGGTATATATTGGAAACGAGCTATTAATCAATTGAAGGTCTTCTGTTTATTAGTTCTCGTTGCTGATATGCTGGTTTATGCTCTTTTTATGTCTCCGCTGGCCTTTGATTTTCTACCATTCAGAATTGCACCATATATCAGGGTTGTTCTTTTCGTTTTGAATATTAGGGAGCTTCGAGAAACCATCGTCATCTTGGCTGGAATGCTCTTCACATACTTAAACATCTTGGCTTTGGGGCTTCTGTTTCTTCTTTTTGCCAGTTGGGTGGCTTACGTGATGTTTGAAGATACAATACAGGGGAAAACAGTATTCACTTCCTATGGTACTACGTTGTGCCAGATGTTTATTTTATTTACCACATCCAATAATCCAGATGTTTGGGTTCCCGCATACAAGGCTTCGCGCTGGTATTGCATTTTTTTCATTCTCTTTGTGCTGGTGGGGGTTTACTTTGTTACAAATTTGGTCCTTGCCGTTGTTTATGAGAGTTTCAAGAGTCAGCTTGTCAAACAAGTTTTTGAGATGGATCGTATGAGAAGAACTATGTTGGAGAAAGCTTTTGTTCTCTTAGATACAAATAATGTTGGATCTCTTAACAAAAATCAATGCATTAGGCTCTTTGAGGAGTTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGGGAAGAATTTGAGTTGATATTTGATGAGCTGGATGATAGTCATGATGTAAAGATAAACAAGGATGAATTTGCTGATATTTGTAATGCCATTGCTTTAAAATTCCAGAAGGAGGATACTCTGTCTTACTTAGAGTATTTAGCATTCTACAATTCATCTACCTCAAAAAGATTGAAAGCCTTCGTGAAGAGCCCCATGTTTGGGTACCTGGTGTCCTTCATTCTCATACTGAATCTGGCTGCTGTTATTATTGAGACAACGCTTGATATAGAAAACAATTCTGCTCAAAAGGTGTGGCAAGTGGTTGAGTTCATTTTTGGGTGGATATACGTAATAGAAATGGTTCTAAAGGTTTATTCATATGGATTTGAGAACTATTGGCGGGATGGTTCAAATCGCTTTGATTTTATTATCACATTGATAATTGTCATTGGAGAAACTATAACTTTTGCTTCACCTGATGGTCTACTTTTTTTCTCAAATGGAGAATGGATTCGATATCTCCTCCTTGCTAGAATGTTGAGATTGATAAGGCTCCTAATGCATGTCAAGCGATACCGAGGCTTTGTGGCAACTTTCTTAACTCTTATACCCAGCTTGATGCCATACCTAGGGATCATATTTTGTGTCTTATGTATTTATTGCTCACTTGGTGTACAGATTTTTGGTGGAATCGTTAATGCTGGAAACCCTGAATTGGAAGCAACAAGCCTTGCTGATAATGACTATTTGCTTTTTAATTTCAATGATTATCCAAATGGAATGGTGACACTTTTCAATATGCTAGTCCTGGGAATCTGGGAAGAAGTGATGCAGAGCTACCAGGAGTTAACTGGGACTTTTTGGACCAATGCGTACTTCATTAGCTTCTACTTAATAACTGTTTTGCTGCTTCTGAATTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTCGCTGAAATGGAGCTTGAGTCGTCAGAAACTTGTGATGGAAATGACAAGGAAGTTGAAGGATATAAATATCGACGGCGATCTATTGGCACAAAAACACGAAGTCAGAGGGTTGATGTTCTTCTTCATCATATGTTGAGTGCTGAGTTGGGTCAAACTCAGCCTTCCAATCCATAA 2202 0.3887 MEPLLKGESSDQRYRSRGIRGRTDAITYGSNYEKAAALIDLAEDGVGLPVQILDSSSFQSYARFYFIFTKCNLIWSLGYFALIVLNFFEKPLWCERNSTHSCNDREYFFLGQLPYLTAAECLIYEGIILILLIIHTFFPISYEGSGIYWKRAINQLKVFCLLVLVADMLVYALFMSPLAFDFLPFRIAPYIRVVLFVLNIRELRETIVILAGMLFTYLNILALGLLFLLFASWVAYVMFEDTIQGKTVFTSYGTTLCQMFILFTTSNNPDVWVPAYKASRWYCIFFILFVLVGVYFVTNLVLAVVYESFKSQLVKQVFEMDRMRRTMLEKAFVLLDTNNVGSLNKNQCIRLFEELNKYRTLPKISREEFELIFDELDDSHDVKINKDEFADICNAIALKFQKEDTLSYLEYLAFYNSSTSKRLKAFVKSPMFGYLVSFILILNLAAVIIETTLDIENNSAQKVWQVVEFIFGWIYVIEMVLKVYSYGFENYWRDGSNRFDFIITLIIVIGETITFASPDGLLFFSNGEWIRYLLLARMLRLIRLLMHVKRYRGFVATFLTLIPSLMPYLGIIFCVLCIYCSLGVQIFGGIVNAGNPELEATSLADNDYLLFNFNDYPNGMVTLFNMLVLGIWEEVMQSYQELTGTFWTNAYFISFYLITVLLLLNLVVAFVLEAFFAEMELESSETCDGNDKEVEGYKYRRRSIGTKTRSQRVDVLLHHMLSAELGQTQPSNP 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi903g00001 733 FunFam Two pore calcium channel protein 1 422 554 - -
Gabi903g00001 733 Gene3D - 555 711 - -
Gabi903g00001 733 CDD EFh 327 392 IPR002048 GO:0005509
Gabi903g00001 733 SUPERFAMILY Voltage-gated potassium channels 429 675 - -
Gabi903g00001 733 Pfam Ion transport protein 430 676 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi903g00001 733 Pfam Ion transport protein 130 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi903g00001 733 Gene3D - 310 393 - -
Gabi903g00001 733 SMART efh_1 368 396 IPR002048 GO:0005509
Gabi903g00001 733 SMART efh_1 327 355 IPR002048 GO:0005509
Gabi903g00001 733 FunFam Two pore calcium channel protein 1 202 313 - -
Gabi903g00001 733 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 2 729 IPR044581 GO:0005245
Gabi903g00001 733 FunFam Two pore calcium channel protein 1 555 712 - -
Gabi903g00001 733 Gene3D - 421 554 IPR027359 -
Gabi903g00001 733 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Gabi903g00001 733 SUPERFAMILY EF-hand 320 400 IPR011992 -
Gabi903g00001 733 Gene3D - 202 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi903g00001 Gabi-Chr903 1570 32122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi903g00001 1 732 Ion Channels AT4G03560 67.804 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi903g00001 K16900 - gmx:100806160 1179.85