Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi898g00005 ATGGGTTTTGATGATTTTAGCAAGGATGATGAAGGTTCACTTCCTGGGTTTCGTTTCCACCCCACTGATGAAGAACTTGTAGGTTTCTATCTGCGCCGGAAGCTTGATAAGAAACCCATTAATCTCGAACTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAAAGGCAGTAGTAGTGGAGGAGAGAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGGAAATACAGGAATAGCGTAAGGCCCAACAGAGTCACTGGCTCTGGGTTCTGGAAAGCAACTGGGATAGACAAGCAAGTGTTCTCACTCGGAGGAGAAGGCAATGACTGCATAGGACTCAAGAAAACACTTGTTTACTACCGTGGCACCGCCGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCCTCTGATCATGACATCAATAACAACGCATCTATTGCCCAAGAAGCTGAAATTTGGACATTGTGTAGAATTTTAAAAAGAAATGTAACGCAAAGGAAGTACACACCAGATTTGAGACAATTAGCTTCTAAGCGACTTTCCAGTGATAAGATAACAAGAATGAGAAGTGTGGAGTTTAACACAAATGGAGAAGCATATATCAATTTTGGTACAAGCCTTGGCCATCATGAAAATGATCGTAAGCCAGTGGTAAAAAACACAAGCAGTGATCAAAGGCATCAGTTTCATGTAGGTGAGTTGAGCTCCCCCGTGGCACACCAAACTCAATTAACAGCACCTTCATCAAACTTCTGGATTAACCCTGAAGCGAACGACTTCTTCGCGTTTGAGAATTGGGACGAGCTTGGATCGGTTGTGAAATATGCTGTTGATTCGTCTACGATTTAA 876 0.4281 MGFDDFSKDDEGSLPGFRFHPTDEELVGFYLRRKLDKKPINLELIKQIDIYKYDPWDLPKGSSSGGEKEWYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKQVFSLGGEGNDCIGLKKTLVYYRGTAGKGTKTDWMMHEFRLPSDHDINNNASIAQEAEIWTLCRILKRNVTQRKYTPDLRQLASKRLSSDKITRMRSVEFNTNGEAYINFGTSLGHHENDRKPVVKNTSSDQRHQFHVGELSSPVAHQTQLTAPSSNFWINPEANDFFAFENWDELGSVVKYAVDSSTI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi898g00005 291 Gene3D NAC domain 22 174 IPR036093 GO:0003677|GO:0006355
Gabi898g00005 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 228 - -
Gabi898g00005 291 FunFam NAC domain-containing protein 35 22 173 - -
Gabi898g00005 291 Pfam No apical meristem (NAM) protein 15 143 IPR003441 GO:0003677|GO:0006355
Gabi898g00005 291 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Gabi898g00005 291 SUPERFAMILY NAC domain 8 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi898g00005 Gabi-Chr898 179041 180870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi898g00005 10 170 NAC Transcription Factor Family AT5G39820 58.427 6.72e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi898g00005 NAM 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi898g00005 - - gmx:100790471 427.943