Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi897g00015 ATGGCATATTTTGTCTTTAGTTTACTAGTTCTGGCACTTATATTTGGTATTGCCTCTAATGTTTTGTTCATACCAGCTGTTATTGCTAACAGGATGACAGCTTCTTCTAGTTCCTCAAACAAAAATCAAGAACAAGCAGCTTTGCTCCAGAGTGGTTGGTGGAATCATGACCGAAACATATCAAACCATTGTAATTGGACAGGTATCACGTGTAATGAAGCTGGAAGCATTACAAAGATTTCAGCATTGAAAACTCCTCCACCAGAATTGCAGCGGTTTCAGAACTTGAAGTTAACTGCCTTCACCAATTTAGTCCGTATAGATCTTACTGGGTTGGGACTTACAGGAATTATCCCCACAGAAATAGGCACACTTACGAAGCTTTCATATATTGACCTCTCTTACAATAGCCTTCAAGGTAAGTTGCCTAAAGCACTTTCAAATCTCACTCAACTTGAGTCGCTTGATGTTTCTAATAACCATATTGAAGGTACCATACCAGAAGAATTAGGGAATTTATCCAATTTAGAGGGATTATATCTTTCAAATAATTTACTTAATGGTACAATCCCTTCTACTTTGGTTCAATTAGGGAATTTGACTGATCTTTCCCTTAGTTCTAACCAAATTGAAGGTCCAATACCAGTAGAGCTAGGAAATTTGTCCAATTTAAGGGGACTATACTTTTCAAAAAATTCACTCATTGGTTCAATCCCTTATACTTTGGGTCAATTGAAGAATTTAGTCCATCTCTCCCTTGATTCTAACCGAATTGAAAGCTCCATACCAGTAGAACTAAGGAATTTGTCCAATTTAAGGGGATTATACCTTTCAAATAATTCACTCACTGGTTCAATCCCTTATACTTTGTGTCAATTGAAGAATTTGGTCTATCTCTCCCTCGATTCTAACCAAATTGAAGGTCGCATACCAGTTGAACTAGGAAATTTGTCCAACTTAGAGGAATTGCATCTTTCAAATAATTCATTCACTGGTTCAATCCCTTATACTTTGGGTCAACTAGAATCTTTGGTCTATCTCTCCATTAATTCTAACCAAATTGAAGGCCTCATACCAGTAGAACTAGGGAATTTGTCCAATTTAGAGGAGTTATATCTTTCGAATAATAACATCTCTGGTGTTATACCTCCAAATCTTTTTCAAATGACCGAAATGCATTCTCTGCATCTTTCATCAAATCAGTCGTATGGTTCAATACCATCAGAGATTGTGAAAGCCACCAGACTTTGGGATCTAGACCTTTCCCACAACAACCTTATAGGGTCTATCCCATCTCCTATCCTGAATTGTCCCTTTCCTACAACAATGGATTTAAGCTACAACTTGTTGAGTGGAAGCATTCCTCCCCAAATTGGTTGTTGTGTTGTTACCCTTAACCTTAGCCACAATTTTCTTAAGGGTGAGATTCCATTTATTTTGGGACCAAATTCTGTGGTAGACAAGTTGGATCTTAGTTATAATAATCTCACTGGTACACTATACAAGGAGCTTGCTTTTTTAGAGTATATAAACCTTTCATACAATTCCTTTGACTTTTCAAGAGATCTTGATTTTGAGTCACAATCACCAAACTATTGTTATTTCAAGGAAGACTCATTAATCAGTTACAATACACCAGATTTCACATTCTGTCATTCTATCCACCAAACCAATCATCGCACTAGTAAAGCTAAGCCTTTCATTCTAATTTCTCTTCCTATCATTTGTTTCATTATTCTTGTACTTCTTTCAACATTATATTTCACAAGATGTACTTCTAAGATCAAATTTGAAGGAAGATCAACAAAGAATGGAGACTTGTTTTCTATATGGAACTATGATGGTAAAATTGCATTTGAAGACATTATTGAAGCAACTGAGGACTTTCACATCAAGCACTGCATTGGAACTGGTGCATATGGCAGTGTCTATAGAGCACAGTTGCCGAGTGGCAAAATTGTTGCATTGAAGAAACTTCACCAAATGGAATCTCAAAATCCATCTTTTGACAAGAGTTTTCGCAATGAGGTCAAGGTGTTAACAGAAATCCGTCACAGAAACATTGTAAAGCTTTATGGCTTTTGCCTCCACAGTCGATGCATGTTTTTGATCTATCAATACATGGAAAGAGGTAGCTTATTATATCTTATAAGCAATGATGTGGAAGCTGAGGGGTTGAATTGGAGTAAGAGGGTGAATATCATTAGAGGAATTGCACATGCTTTGTCCTACATGCATCATGATTGTACTCAACCAATTGTTCATCGGGATGTAACAAGTAGCAATGTTTTGTTGAATTCACAATTGGAGGCTTTTGTCTCAGATTTTGGCACAGCTAGACTCCTTGCTCCAGATTCTTCAAATCAAACCATAGCGGTTGGCACATATGGATATGTTGCCCCAGAGCTTGCCTACACATTGACTGTGACAGAAAAATGTGATGTGTACAGTTTTGGAGTGGTAGCATTGGAAACATTAATGGGAAGACATCCAGGAGAGCTAATTTCATCTTTATCAAACTTATCTACTCAGAATATGTTGTTGAAGGATCTCTTGGACTCACGTCTTCCCCTTCCTTTCTCTCCAAAGGATGAGCAAGATATAGTGCTTGTGGTAACACTAGCATTGGCATGTTTGTGTTCCAAACCAAAGTCCAGACCATCAATGCAACATGTGGCTCAGGAACTCTCTTGTTCCAAACAGCCACTTCCCTTGCTTTTTGGTGAAATTACAATCATTCAGTTGATGCCTCGAGGTATATCTTCTTTCTGTTGA 2775 0.3751 MAYFVFSLLVLALIFGIASNVLFIPAVIANRMTASSSSSNKNQEQAALLQSGWWNHDRNISNHCNWTGITCNEAGSITKISALKTPPPELQRFQNLKLTAFTNLVRIDLTGLGLTGIIPTEIGTLTKLSYIDLSYNSLQGKLPKALSNLTQLESLDVSNNHIEGTIPEELGNLSNLEGLYLSNNLLNGTIPSTLVQLGNLTDLSLSSNQIEGPIPVELGNLSNLRGLYFSKNSLIGSIPYTLGQLKNLVHLSLDSNRIESSIPVELRNLSNLRGLYLSNNSLTGSIPYTLCQLKNLVYLSLDSNQIEGRIPVELGNLSNLEELHLSNNSFTGSIPYTLGQLESLVYLSINSNQIEGLIPVELGNLSNLEELYLSNNNISGVIPPNLFQMTEMHSLHLSSNQSYGSIPSEIVKATRLWDLDLSHNNLIGSIPSPILNCPFPTTMDLSYNLLSGSIPPQIGCCVVTLNLSHNFLKGEIPFILGPNSVVDKLDLSYNNLTGTLYKELAFLEYINLSYNSFDFSRDLDFESQSPNYCYFKEDSLISYNTPDFTFCHSIHQTNHRTSKAKPFILISLPIICFIILVLLSTLYFTRCTSKIKFEGRSTKNGDLFSIWNYDGKIAFEDIIEATEDFHIKHCIGTGAYGSVYRAQLPSGKIVALKKLHQMESQNPSFDKSFRNEVKVLTEIRHRNIVKLYGFCLHSRCMFLIYQYMERGSLLYLISNDVEAEGLNWSKRVNIIRGIAHALSYMHHDCTQPIVHRDVTSSNVLLNSQLEAFVSDFGTARLLAPDSSNQTIAVGTYGYVAPELAYTLTVTEKCDVYSFGVVALETLMGRHPGELISSLSNLSTQNMLLKDLLDSRLPLPFSPKDEQDIVLVVTLALACLCSKPKSRPSMQHVAQELSCSKQPLPLLFGEITIIQLMPRGISSFC 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi897g00015 924 Pfam Protein kinase domain 629 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi897g00015 924 ProSiteProfiles Protein kinase domain profile. 629 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi897g00015 924 FunFam Nuclear pore complex protein NUP107 33 191 - -
Gabi897g00015 924 SUPERFAMILY L domain-like 218 461 - -
Gabi897g00015 924 SMART LRR_typ_2 269 292 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 341 364 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 197 221 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 365 389 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 245 268 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 504 527 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 125 148 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 293 316 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 317 340 IPR003591 -
Gabi897g00015 924 SMART LRR_typ_2 149 173 IPR003591 -
Gabi897g00015 924 Gene3D Transferase(Phosphotransferase) domain 1 708 903 - -
Gabi897g00015 924 ProSiteProfiles Leucine-rich repeat profile. 367 389 IPR001611 GO:0005515
Gabi897g00015 924 SUPERFAMILY Protein kinase-like (PK-like) 611 896 IPR011009 -
Gabi897g00015 924 FunFam Leucine-rich repeat receptor protein kinase EMS1 192 289 - -
Gabi897g00015 924 FunFam Leucine-rich repeat receptor protein kinase MSP1 592 707 - -
Gabi897g00015 924 Gene3D Ribonuclease Inhibitor 196 267 IPR032675 -
Gabi897g00015 924 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Gabi897g00015 924 Gene3D Ribonuclease Inhibitor 268 534 IPR032675 -
Gabi897g00015 924 Pfam Leucine rich repeat 318 378 IPR001611 GO:0005515
Gabi897g00015 924 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Gabi897g00015 924 Pfam Leucine rich repeat 267 306 IPR001611 GO:0005515
Gabi897g00015 924 ProSitePatterns Tyrosine protein kinases specific active-site signature. 753 765 IPR008266 GO:0004672|GO:0006468
Gabi897g00015 924 SMART LRR_sd22_2 293 322 - -
Gabi897g00015 924 SMART LRR_sd22_2 341 362 - -
Gabi897g00015 924 SMART LRR_sd22_2 149 175 - -
Gabi897g00015 924 SMART LRR_sd22_2 365 383 - -
Gabi897g00015 924 SMART LRR_sd22_2 197 223 - -
Gabi897g00015 924 SMART LRR_sd22_2 125 148 - -
Gabi897g00015 924 SMART LRR_sd22_2 245 266 - -
Gabi897g00015 924 PANTHER LEUCINE RICH REPEAT KINASE 2 170 901 - -
Gabi897g00015 924 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 301 525 - -
Gabi897g00015 924 FunFam MDIS1-interacting receptor like kinase 2 708 902 - -
Gabi897g00015 924 Gene3D Phosphorylase Kinase; domain 1 590 707 - -
Gabi897g00015 924 Gene3D Ribonuclease Inhibitor 34 195 IPR032675 -
Gabi897g00015 924 SUPERFAMILY L domain-like 59 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi897g00015 Gabi-Chr897 151156 154252 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi897g00015 103 801 Receptor kinase-like Gene Family AT4G08850 38.202 4.26e-147 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi897g00015 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi897g00015 - - aprc:113851126 1050.43