Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi897g00012 ATGGAAAACCTTCCTCCATTGATTTACAAAAAACCCATTAGAAGAACCTTAAGGCGATCTTCAAATTATCTTGGGGTCAGAAGAAGGCCATGGGGAAAGTATGCTGCGGAGATTAGGAATCCATATACCAAAGAGAGACACTGGCTAGGCACATTTGACACTGCTGAAGAGGCTGCCATAGCTTATGATCTTTCATCTATCAAGATATGTGGCATTGAAAATGCTCGAACAAATTTTCACTACCCTTTGATGTTTCCTCCATCTCCTTCTCTTCCACTGTCTTTGCCCCCACCACCCCCAACAACCCCCGAGTTGGAAGCAAGTGATATCAACGCAGTTGACGATATTATTGATGGTGATGATGAATCTCTTGTTATTGCTTCCATCTTGCAATCTTTTTCTTATTCCGGAAACTGCTCTCTTTAG 426 0.4225 MENLPPLIYKKPIRRTLRRSSNYLGVRRRPWGKYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSIKICGIENARTNFHYPLMFPPSPSLPLSLPPPPPTTPELEASDINAVDDIIDGDDESLVIASILQSFSYSGNCSL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi897g00012 141 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Gabi897g00012 141 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gabi897g00012 141 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Gabi897g00012 141 SMART rav1_2 22 88 IPR001471 GO:0003700|GO:0006355
Gabi897g00012 141 Pfam AP2 domain 22 69 IPR001471 GO:0003700|GO:0006355
Gabi897g00012 141 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 98 - -
Gabi897g00012 141 SUPERFAMILY DNA-binding domain 21 81 IPR016177 GO:0003677
Gabi897g00012 141 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Gabi897g00012 141 FunFam Ethylene-responsive transcription factor 2 21 81 - -
Gabi897g00012 141 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi897g00012 Gabi-Chr897 106912 107337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi897g00012 19 81 AP2-EREBP Transcription Factor Family AT1G12890 71.429 5.69e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi897g00012 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi897g00012 - - gmx:100816937 198.749