Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi897g00009 ATGGCTGCATCAAACTCCTCATCCATAAATGAGGAACAAGAGGCTTTGCCTCATAGCAGGTGGGGAGGCCAAAATATCTCAGAATATTGTGATTGGAATGGTATTGTGTGTAATGAAGCTGGAAGTATTACAAATATTTCAACGGGGCATTATTTTTATGTTCCTCCAACAGAACTCCAGATTCAGAACTTCAATATAACTGCTTTTCCCAATTTAATCCATCTAGAACTTAGTGATTTGGGACTCAAAGGAAGCATCCCCAAAGAAATAGGCTCTCTTACAAAGCTCAAGTATCTTGACCTGTCCTCTAATTGTCTTCAAGGAAATGAGGAAAGAAGAAAGAATGGAGACTTATTCTCAATTTGGAACTATGATGGTAAAATTGCATTTGAAGACATAATTAAGGCCACAGAGGACTTTGATATCAGGTATTGCATAGGAACTGGTGCTTATGGAAGTGTATACAAAGCACAACTTCCCTGTGGTAGAATTGTTGCACTGAAGAAGCTTCACAAAATAGAATCCGAAAATCCATCTTTTTGCAAGAGTTTTTGCAATGAGACCGAGATCTTGACAAAAATTCGCCATCGTAACATCATTAAACTTTATGGTTTTTGTTTGCATAACAAGTGCATGTTTTTGGTGTATGAGTACATGGAAAGGGGAAGCTTGTTTTGCAACTTGTCCAATGATGTGGAAGCACAAGAGTTGAATTGGAGCAAGAGGGTAAATATTGTGAAAGAGATAGCCTATGCCTTGGCTCATATGCATCATGATTGTACTCCCCCTATTGTTCATCGAGATGTTACTAGCAACAATATTTTGTTGAACTTGGAGTCACAAGCTTATGTCTCAGATTTTGGCACAGCAAAACTTCTTGATTGTCATTCATCTAATCAAAGTTTCCATGTTGGCACTTATGGATATGTTGCTCCAGAATTGACTTATACCTTGACTGTGACTACAAAATGTGATGTTTATAGCTTTGGAATGGTGGCTTTAGAAACAATGATGGGTACACATCCAGCTGAATTGGTTTGCTCTTTGCATAAACCATCTATTCAAAACAAGAAGCTGAAAGATATATTGGACTCACGTATTCCACTACCCTTTTTTCGAAAAGATATGCAAGATATTGTGCTTGTTGTAACATTAGCATTAGCATGCCTGTGCCCGGACCCAAAATCAAGACCATCAATGCAGGAAGTAGCTAATGAGCTTTTAGTTTCCAAGTCACCATTGCTTTGGCATTTTCAGGACATTTCAATCAACCAAGTGATTAATCAAAAAATATGTTATAGGTAA 1305 0.3762 MAASNSSSINEEQEALPHSRWGGQNISEYCDWNGIVCNEAGSITNISTGHYFYVPPTELQIQNFNITAFPNLIHLELSDLGLKGSIPKEIGSLTKLKYLDLSSNCLQGNEERRKNGDLFSIWNYDGKIAFEDIIKATEDFDIRYCIGTGAYGSVYKAQLPCGRIVALKKLHKIESENPSFCKSFCNETEILTKIRHRNIIKLYGFCLHNKCMFLVYEYMERGSLFCNLSNDVEAQELNWSKRVNIVKEIAYALAHMHHDCTPPIVHRDVTSNNILLNLESQAYVSDFGTAKLLDCHSSNQSFHVGTYGYVAPELTYTLTVTTKCDVYSFGMVALETMMGTHPAELVCSLHKPSIQNKKLKDILDSRIPLPFFRKDMQDIVLVVTLALACLCPDPKSRPSMQEVANELLVSKSPLLWHFQDISINQVINQKICYR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi897g00009 434 Pfam Protein kinase domain 145 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi897g00009 434 Gene3D Transferase(Phosphotransferase) domain 1 219 414 - -
Gabi897g00009 434 Gene3D Ribonuclease Inhibitor 3 120 IPR032675 -
Gabi897g00009 434 ProSiteProfiles Protein kinase domain profile. 140 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi897g00009 434 SUPERFAMILY L domain-like 25 106 - -
Gabi897g00009 434 ProSitePatterns Tyrosine protein kinases specific active-site signature. 264 276 IPR008266 GO:0004672|GO:0006468
Gabi897g00009 434 Gene3D Phosphorylase Kinase; domain 1 121 218 - -
Gabi897g00009 434 FunFam Leucine-rich repeat receptor protein kinase MSP1 103 218 - -
Gabi897g00009 434 PANTHER LEUCINE RICH REPEAT KINASE 2 109 411 - -
Gabi897g00009 434 FunFam MDIS1-interacting receptor like kinase 2 219 413 - -
Gabi897g00009 434 SUPERFAMILY Protein kinase-like (PK-like) 121 408 IPR011009 -
Gabi897g00009 434 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi897g00009 Gabi-Chr897 66083 68374 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi897g00009 111 312 Receptor kinase-like Gene Family AT4G08850 55.122 2.24e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi897g00009 Pkinase 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi897g00009 - - var:108346549 652.899