Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi894g00014 ATGGGGTACGATTCGGATAGCCCCTCGCAAGACGGGAGGGATGAAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTTGATAATTCTGGTGATCTCGATGTTGATTATCTTGACGAGGATGCAAAGGAGCATCTTTCTGCATTGGCTGACAAGCTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTTGTTGAACAAGATTGTGGTGAAAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACTGAAGCTGCCAATGAAGAGGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCCTCTCTTGAAGCTTTGGAGTCCAGACCTTCTGTCTTTGATGATGAAAATTATGATGAAGAATCTGAACAGGAACAAGACTTAGTGAATAACGATTCTAAAATTGATAACATCTCTTTAGCTGGGGAGCCAGAAGAGAGCTTTCTGGATGCACTTAAAGGGGAGAGCGCTCCCGAGCATGATTCACAAGTTGGCTCACTGCAGACTGAGGAATTGGACTCTGATGAACAAAAACTTGAGGAGGAAGGGCCTGAAGTTCTGAAAAGGTCTACGCCGCTGCCCGTTTTGTGTGTGGAAGATGGGATGGAAATTTTACGCTTCTCTGAAATCTTTGGTATTTATGAACCTTTAAGAAAGGGAGAAAAGAGAGAGCACCGGCATTCCACTCCTAGAGATAGATATAAGTCTTCAGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAATTTCTCAAGTGCTTTTCTCAGAATCTCTCACTTACTAAACAGGATTGTATAGTCTGTAATGATGTATCAGAAAGCAATGATGTTGACTTGGAATTTCCGAAATTCGGATTTCTTCACAGGGATGTCTCAATGGCTGTGAAAGATGATCGACAATCAAAGGATTCTTATCTTAGTGCTGAACCAATGAAAGGGGATTTTGTAGATGATCTTTCCATGAAAGATCATCCTCTCACGTGGGCCAACTTTTATCCTCTTGATCAGCGAGACTGGGAGGATGATATCCTTTGGGGCAATTCTCCTGTTGCAAGTGACAATAATGTTGAGAGCTATGAAATTTCTGGGCCTGAGTTGGGAGTTTCTCTTGGCAGTGAAATAGAAATTGAAAGTGGGATACAGAATCTTCAGTTGGTGCCCCACAAGATACTCGAGGACAAAGATCATAATGTCTTCATGTGCTGCTCTCCTGTCTCATTGGAACCCTTTGGATCAAGGGATTCTTCTGGAGCTACAACCAATTTGTTGTCCAAAAGTCTATTTCATCCCCAACTTTTGAGGCTACAATCCAGATCTGAAGTGGATAGCTCTAGTCTTGCAGATGGAGGGGGGGCGGATATGTCTGAGAAGCATAATCAAAGTGGTCAAGTAAAGCATTTAACCAAGTTTATGTCACATAACAGAGACATGATGGAGGACTCCTGGTTAGACAAGATAATATGGGAGGAGCTTGATCGGCCTAATGTGGAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTGGATAGCAAGGATGGCACACATCTTCGCCTTCATGCTGGGGCTATGATTTTAACTCGTTCTTTAAAATCAAGCAGTGGGGACTCTTCTGAGCTGCCAGGACATGGGGGTCAATATGGGTGGCGACACGTTGCTAATGACAAACACTATTCAAACAGGAAAACCTCTCAGCAACTGAAATCGAATTCTAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAGCCTGCACTGAAGTTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCATCGGCCTAAAGCATTATGGTACCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTACCAACACAGGCACCCATGAAAATTATTATGAAGAGCTTGGGCGGCAAGGGGAGTAAACTGAATGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCTAAAGCTTCCAAAAAGCTAGATTTCAAGGTATCAGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATGACAAATCCCTTGCTGCACAAAATGTTAAACCAAACTCCTTGTTACATCTTGCCCGTACGAAGATACAATTGTGGCCAAGGGCACAAAGGGTTCCTGGTGAGAATAAATCCTTGCGTCCTCCAGGGGCATTTAAGAAAAAGTCTGATCTGTCTGTGAAAGACGGACATGTTTTTCTGATGGAGTATTGTGAGGAAAGGCCTTTACTTTTGAGCAATGTAGGAATGGGCGCAAGACTTTGTACATACTATCAAAAATGTTCACCGGATGACCAATCTGGCTCCTTATTACGGAACACAGATAGCAGCTTGGGGCACATTATTTCTCTGGATCCTGCTGATAAATCTCCTTTCCTTGGAGATTTAAAACCTGGTTGCAGTCAATCATCACTTGAGACAAATATGTATAGAGCACCCATATTTCCTCATAAAGTTCCATTAACTGACTACCTGCTGGTTCGTTCATCAAAGGGAAAGCTGTCGTTGAGGCGCATCGATAAAGTTCATGTTGTCGGGCAGCAGGAGCCTCTCATGGAGGTATTATCACCTGGAAGTAAGAATCTTCAGACTTACATGATGAACAGGCTACTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGACATTTGGCTCCACACATCCGTATTGATGAATTTTTGTCACAGTTTCCTTACCAATCAGAAGCCTCATTCCGTAAGAAAATCAAGGAATATGCCAATTTACAGAGGGGAACAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTCCGCATGTGGTCGGAGGATGAACTGAGAAAAATGGTGACACCAGAGCTTGTTTGTGCCTATGAGAGTATGCAAGCTGGCCTCTACCGTCTAAAACATTTAGGAATAACTGAAACACATCCTACTAATATTTCGTCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCGCACATTGAGAGGGAACTGCAAATTACTCCTTGGAACTTGAGTAACAATTTTGTTGCCTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGAATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAACGGTGAAGAAGAAAGCTGCTGCTGGCAGGGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCAAGAGAGGTTCTTCTCAAGTTCAATGTTCCTGAGGAAGTCATTGCAAAACAAACCCGGTGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCAACAACTATCAGCAAATATGCTCGGGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCCGAGAAAAGTGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCAGCTGTAAATGGTGATGAAAATGATAGTGATTCAGAAGGGAATAGCGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGGGTACCAATGACTTAAAACGTGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACGCCCAACTTTGGCCCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCCGCTGAATTATGCAGATTGCTTATGGATGATGATGAAGCTGACAGGAAGAAAAAGAAGAAAGCTAGAGTTATCGTGGAAGAAGCAAGACTGGTACCAAAGCTGCAATCAAAATTCATCTTTGACAACACTGAACAAGTTAAGCAAAAAACAAATACTTTGCAACTAGATGGAACTAATCATTTGAAAGAGGATGCAATTACAGATCTCAGGGAGGAGGAAAACTTCCCATCTAAAAAAAGTAAATCAGTGAAGGTCAATAAAGCAAAGAAGAATGATATCACACCTATTAGTCTACCCAATAAAAAAATAAAATTAAATATGGGAGAAGGAATCAAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGAGAACGAACAAGAACTGTCCAAAATATGGTGAAGATCTAGAAGCACAACTTGAATCTACAGATATAGAAAAATCATCTGGAAAATCTAGCTTTTTGGATCCCTCCGGTCAGTCCCTGAACAAAGCCCCCTCCAAAAAGTCAATATCAAAAAGCGCAACAAAAATTGCTCCAGTTGACAATTCAACAAAAATTCCAGTGAAGTTCAAATGCAGCTCAACTGAGAAATCTTCCGATAAACCTGCAATGGAAACCCTGCAGAGTTCTGAGAAGCCAGTCACTTCTGATTCAGAAACTGCTAAGGTTAATAAGATAATTATTCCCAACAAAGCGAAGCCAGATGATACGCAGGCTGAATCTCGTAAGCATGCTATTGTTATACGGCCTCCTACTGATTCTGGTAGAGGTCAGATTGATTCTCCTAAGTTCCCAATTAAAATACGCCCGCCTTCAGAAACAGATAGGGAGCAAAGTCATAAGAAGATTATTATAAAACGTGCGAAGGAGGTTATTGATCTGGAACTGGACAGTCCTGGTGGAAACACAGGATTTGAACACAGGAAAACTAAAAGAATTGTTGAATTGTCGAATTTTGAGAAGCACAGAAAGCAGGAGGCCATGTATTCAACTGAAGGTTTGGTAAACTGGAAAGCTAAAGAGGATAGAAGATGGTGGGAAGAGCAAGAGAAACGGAGAAATGAAGCAAGACTCAGAGAAGACAGAACAAGGAGGCATCACAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAGGTTAGACGAGATAAAAAGATACGAAGAAGATATTAGAAGAGAGAGGGAGGAGGAAGAACGACAAAAAGCAAAGAAGAAAAAGAAGAAAAAAAAGCCTGATTTAAGAGATGATTATTTAGATGACCTCAGAACAAGAAGATATGACAAGAGGATTGTAGAAAGAGAACGGAGTGGAAAAAGGAGATCTGTTGTTGAGTTAGGAAAGATTGGTGCAGATTATAATATGCCACCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGCATTGTGGACGCCATTGTTAAAGATAGGTATGATCTGTCTTATCTTTTCGTGAAACCGGTGTCAAAGAAGGAGGCTCCTGACTACCTGGATATCATAGAGAGGCCTATGGATCTTTCCCGAATCAGGGAAAGGGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTTAGACATGATATCTGGCAGATTACTTATAATGCCCATAAATATAACGATGGGCGAAATCCGGGAATTCCTCCGGTTGCAGATATGCTTTTGGAATATTGTGATTATTTATTGAATGAGAACGACGATAGCCTCACTGCTGCTGAAGCTGGTATTGAAACTCGTGATTTCTAA 5658 0.4185 MGYDSDSPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCGEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASLEALESRPSVFDDENYDEESEQEQDLVNNDSKIDNISLAGEPEESFLDALKGESAPEHDSQVGSLQTEELDSDEQKLEEEGPEVLKRSTPLPVLCVEDGMEILRFSEIFGIYEPLRKGEKREHRHSTPRDRYKSSDLSDDIVEEDEEEFLKCFSQNLSLTKQDCIVCNDVSESNDVDLEFPKFGFLHRDVSMAVKDDRQSKDSYLSAEPMKGDFVDDLSMKDHPLTWANFYPLDQRDWEDDILWGNSPVASDNNVESYEISGPELGVSLGSEIEIESGIQNLQLVPHKILEDKDHNVFMCCSPVSLEPFGSRDSSGATTNLLSKSLFHPQLLRLQSRSEVDSSSLADGGGADMSEKHNQSGQVKHLTKFMSHNRDMMEDSWLDKIIWEELDRPNVEPKLIFDLQDDQMHFEVLDSKDGTHLRLHAGAMILTRSLKSSSGDSSELPGHGGQYGWRHVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQAPMKIIMKSLGGKGSKLNVDAEETLSSVKAKASKKLDFKVSETVKIFYLGRELEDDKSLAAQNVKPNSLLHLARTKIQLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHIISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKVHVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLAPHIRIDEFLSQFPYQSEASFRKKIKEYANLQRGTNGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSNNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSATVKKKAAAGRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENDSDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKARVIVEEARLVPKLQSKFIFDNTEQVKQKTNTLQLDGTNHLKEDAITDLREEENFPSKKSKSVKVNKAKKNDITPISLPNKKIKLNMGEGIKVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLESTDIEKSSGKSSFLDPSGQSLNKAPSKKSISKSATKIAPVDNSTKIPVKFKCSSTEKSSDKPAMETLQSSEKPVTSDSETAKVNKIIIPNKAKPDDTQAESRKHAIVIRPPTDSGRGQIDSPKFPIKIRPPSETDREQSHKKIIIKRAKEVIDLELDSPGGNTGFEHRKTKRIVELSNFEKHRKQEAMYSTEGLVNWKAKEDRRWWEEQEKRRNEARLREDRTRRHHKEEIRMLKEQERLDEIKRYEEDIRREREEEERQKAKKKKKKKKPDLRDDYLDDLRTRRYDKRIVERERSGKRRSVVELGKIGADYNMPPTKRRRGGGGEVGLANILESIVDAIVKDRYDLSYLFVKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDIWQITYNAHKYNDGRNPGIPPVADMLLEYCDYLLNENDDSLTAAEAGIETRDF 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1485 1521 - -
Gabi894g00014 1885 Pfam Protein of unknown function (DUF3591) 588 1155 IPR022591 -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 93 114 - -
Gabi894g00014 1885 SMART bromo_6 1760 1871 IPR001487 GO:0005515
Gabi894g00014 1885 PRINTS Bromodomain signature 1832 1851 IPR001487 GO:0005515
Gabi894g00014 1885 PRINTS Bromodomain signature 1784 1797 IPR001487 GO:0005515
Gabi894g00014 1885 PRINTS Bromodomain signature 1798 1814 IPR001487 GO:0005515
Gabi894g00014 1885 PRINTS Bromodomain signature 1814 1832 IPR001487 GO:0005515
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1242 1274 - -
Gabi894g00014 1885 Pfam Bromodomain 1772 1847 IPR001487 GO:0005515
Gabi894g00014 1885 CDD Ubl_TAFs_like 669 740 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1439 1579 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1442 1478 - -
Gabi894g00014 1885 Coils Coil 1674 1708 - -
Gabi894g00014 1885 ProSitePatterns Bromodomain signature. 1786 1843 IPR018359 -
Gabi894g00014 1885 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Gabi894g00014 1885 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Gabi894g00014 1885 Gene3D - 651 741 - -
Gabi894g00014 1885 Gene3D - 1745 1884 IPR036427 GO:0005515
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1690 1710 - -
Gabi894g00014 1885 FunFam Transcription initiation factor TFIID subunit 1 651 741 - -
Gabi894g00014 1885 Pfam Ubiquitin family 673 741 IPR000626 GO:0005515
Gabi894g00014 1885 Gene3D - 22 68 IPR036741 -
Gabi894g00014 1885 Coils Coil 1271 1291 - -
Gabi894g00014 1885 ProSiteProfiles Bromodomain profile. 1781 1851 IPR001487 GO:0005515
Gabi894g00014 1885 SMART ubq_7 669 741 IPR000626 GO:0005515
Gabi894g00014 1885 CDD Bromodomain 1770 1866 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 66 120 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1533 1547 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 596 615 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 249 270 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 470 495 - -
Gabi894g00014 1885 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1884 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Gabi894g00014 1885 ProSiteProfiles Ubiquitin domain profile. 669 738 IPR000626 GO:0005515
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1247 1274 - -
Gabi894g00014 1885 SUPERFAMILY Bromodomain 1754 1871 IPR036427 GO:0005515
Gabi894g00014 1885 SUPERFAMILY Ubiquitin-like 639 738 IPR029071 -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 137 216 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1 30 - -
Gabi894g00014 1885 MobiDBLite consensus disorder prediction 1643 1669 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi894g00014 669 738 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 35.714 2.81e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi894g00014 K03125 - gmx:100780733 3128.96