Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi894g00011 ATGGACGGTGACGACGATGGTCATCCTTTCCGTGAAAACGTTGTTGTCTTACTCATTGCCATGGGTTCAGCAGCATTTGTTGTCTCAACTTACCATCTCATAGCTATTTGGTGTTGCAACCAGCGCCTCACAGACGACCAAAACTCAACGGAACAGCAACCGCCACCAACACCGACCATCAACGCTAGCATTTCCTCGTCACTGGCACTCATGATTCCAACACACAAGTATCATAAGAAGAAGAAGAAGAAAGGTGACCATGTGGTTTCAGATGATGGTGATAGGGATGAAGGTGACACATGTGCAGTGTGCTTGGGAGATTTTGAGGATGGTGAAGAGTTGAGAACGTTGCCTGAATGCATGCACTCTTTCCACGTACCTTGCATTGATATGTGGCTCCATTCACATTCAAGTTGCCCCATTTGCCGTGCCTCTGCCACGCCTTCGCCGGCGGCGCTCCACCACTTGCCGGATTTCGGTCCCCCTGATTTGAATGCACATCACAGCATTGATGTGATGGAAATTGGTCTTGTTCAAAGTGGGTTGCCACCACGGTGA 558 0.4928 MDGDDDGHPFRENVVVLLIAMGSAAFVVSTYHLIAIWCCNQRLTDDQNSTEQQPPPTPTINASISSSLALMIPTHKYHKKKKKKGDHVVSDDGDRDEGDTCAVCLGDFEDGEELRTLPECMHSFHVPCIDMWLHSHSSCPICRASATPSPAALHHLPDFGPPDLNAHHSIDVMEIGLVQSGLPPR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi894g00011 185 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Gabi894g00011 185 SUPERFAMILY RING/U-box 92 149 - -
Gabi894g00011 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 148 IPR013083 -
Gabi894g00011 185 SMART ring_2 101 142 IPR001841 -
Gabi894g00011 185 CDD RING-H2_EL5-like 101 143 - -
Gabi894g00011 185 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 148 IPR044675 -
Gabi894g00011 185 Pfam Ring finger domain 99 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi894g00011 Gabi-Chr894 74045 75154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi894g00011 14 181 C3H Transcription Factor Family AT1G04360 30.000 7.86e-23 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi894g00011 - - gmx:102660266 182.185