Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi894g00002 ATGGAGTCCAGTGATCTTGAGAACGTGTCAGTTAGAGAGGTCCATGCAAATGGAAGCCGCATGATTGCATCAGAAGTTGAGGCTAAGCTCGATGAAGGAAATATTCAAGAGGCAGAATCTGCTTTGCGAGAAGGGTTGTCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAACCTTCCTTTTCTGAAAAACCACCTGTCAAGAAAGGTCGCACTCGTACTGACTCACCTTCCTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGATGCCATCTACTTAAAAGCCAAGTCTCTACAAAAGCTGGGGAAATTAACAGAAGCTGCTAATGATTGTAAACGTGTTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATTCCTGACATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAACTCCTTCCAGAGCTTTTGAAACAAGCTGGTTGCTATGATGAGGCAATCTGTGCTTATAGGCGTGCTCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAATCATTTGTTGGTTTTTTGCTGTATAGTGGGGTAGAGGCTAGTCCACCTAGTTTAGCAGTTCAGATTGAAGGGTCTTATGTGCCTAAAAATAATATCGAAGAGGCAATTCTGCTTTTAATGATTCTTATGAGAAAATTTTGCCTTGGTAAGACGAAATGGGATCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTATGTGTAACCAAACTTCTATTTTAGCAAAACAACTTGAGGACTTGATGCCTGGAGTATACCATCGTATTGATCGTTGGAATTCTTTAGCTTTATGTCATAGTGGAGCTGGACAAAATGACAATGCTTTGAATCTGCTTAGGAAATCTTTGCACAAACACGAACAACCAAATAACCTTACATCACTATTGTTAGCTGCTAAGATCTGCAGTGAGGATCCCCATCTTGCTGCTGAGGGAGTGGGCCATGCAGAGAGGGCAATCAGTAATGCTCAGGGTTCTAACGAGCATTTGAAAGGTGTTGCGCTTCGGATGTTGGGACTTTGTCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTTCGAGAGGTCCCATCTTCAGTCCAAAGCTCTGGAGTCATTGGAGGAGGCAACTAAACTGGAGCCGAACAATTCTGATCTGATTTTTGAGTTGGCTGTTCAATATGCAAAGCACCGAAATTTGACTGCTGCTTTGCGCTCTGCGAAGCTTTTCTTTAATGAAACTGGTGGCTCTATATTGAAATCTTGGAGATTGCTTGCCCTGATTTTGTCTGCACAACAAAGATTTTTAGAAGCTGAAGTGGTAACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAACAAGGACCACTGCTTAGGCTGAAAGCAAAGCTGAAGATCTTCCAATCACGACCCATAGATGCCATTGAAACTTATCGGTACCTACTTGCGTTGGTTCAAGCCCAGAAGAAATCCTCTGGTTCTCTCCGAATTAGTTCAAAGGTTGAGGTTGATAAAGTAAATGAAGCTGATATTTGGCATGGTCTGGCAAATTTATACGCTAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAATTGAAGGAGTACTCCGCGGAAATTATGCACACTGAAGGTGTTTTGTTTGAGGGACGTGGGCAAATTCAAGAAGCTCTTGATGCTACTCTTAATGCTGTCCTACTTGAACCAAACTATGTTCCAAGCAAGATTTTGACGGGTGCTTTGCTTCAGAAAATGGATTCAAAGGTTTCGCCTGCTGCAAGAAGCTTACTGTCTGATGCACTTAGAATAGAACCCACTAACCGCAATGCTTGGTTTTGCTTGGGGTTGGTTCACAAGCATGATGGCCGAATAAGTGATGCTGCTGACTGCTTTCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAAAGTTTCAGCTCTATACTTTGA 2085 0.4283 MESSDLENVSVREVHANGSRMIASEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSFSEKPPVKKGRTRTDSPSSVSQHAASLVLDAIYLKAKSLQKLGKLTEAANDCKRVLDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELLKQAGCYDEAICAYRRALLSQWNLDNDCCARIQKSFVGFLLYSGVEASPPSLAVQIEGSYVPKNNIEEAILLLMILMRKFCLGKTKWDPSVMEHLTFALSMCNQTSILAKQLEDLMPGVYHRIDRWNSLALCHSGAGQNDNALNLLRKSLHKHEQPNNLTSLLLAAKICSEDPHLAAEGVGHAERAISNAQGSNEHLKGVALRMLGLCLGKQAKVASSDFERSHLQSKALESLEEATKLEPNNSDLIFELAVQYAKHRNLTAALRSAKLFFNETGGSILKSWRLLALILSAQQRFLEAEVVTDAALDQTARWEQGPLLRLKAKLKIFQSRPIDAIETYRYLLALVQAQKKSSGSLRISSKVEVDKVNEADIWHGLANLYASLSHWKDAEICLQKARELKEYSAEIMHTEGVLFEGRGQIQEALDATLNAVLLEPNYVPSKILTGALLQKMDSKVSPAARSLLSDALRIEPTNRNAWFCLGLVHKHDGRISDAADCFQAASMLEESDPIESFSSIL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi894g00002 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Gabi894g00002 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Gabi894g00002 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Gabi894g00002 694 SMART tpr_5 378 422 IPR019734 GO:0005515
Gabi894g00002 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Gabi894g00002 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Gabi894g00002 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Gabi894g00002 694 Gene3D Tetratricopeptide repeat domain 282 452 IPR011990 GO:0005515
Gabi894g00002 694 ProSiteProfiles TPR repeat profile. 582 615 IPR019734 GO:0005515
Gabi894g00002 694 PANTHER PROTEIN NPG1 7 691 IPR043376 -
Gabi894g00002 694 Gene3D Tetratricopeptide repeat domain 20 206 IPR011990 GO:0005515
Gabi894g00002 694 SUPERFAMILY TPR-like 460 682 IPR011990 GO:0005515
Gabi894g00002 694 SUPERFAMILY TPR-like 53 447 IPR011990 GO:0005515
Gabi894g00002 694 Gene3D Tetratricopeptide repeat domain 453 616 IPR011990 GO:0005515
Gabi894g00002 694 Gene3D Tetratricopeptide repeat domain 617 689 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi894g00002 Gabi-Chr894 19188 26241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi894g00002 7 694 Calmodulin-binding Proteins AT2G43040 72.688 0.0 980