Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi891g00019 ATGTCTCAAAGAATCGGGACAAGGCTGTTCGTCAGCAGATTATCGTTTTTCACTACGAAGGAGCAGCTACAGATGTTGTTCTCTCCATTCGGAGTAGTTAAGGAAGCTAGTCTAGTGATGGACCCAAAAACTGGAAGGCCCAAAGGGTTTGGTTTTGTCTCCTACGAGTCTGAAATTGAAGCGGAAAAGGCTATGAAAGCCATGAATGGCAGGATAGTTAATGGAAGGCTGATTTTCGTTGAACCTTCAAACGCTAAATGA 261 0.4368 MSQRIGTRLFVSRLSFFTTKEQLQMLFSPFGVVKEASLVMDPKTGRPKGFGFVSYESEIEAEKAMKAMNGRIVNGRLIFVEPSNAK 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi891g00019 86 Gene3D - 2 86 IPR012677 -
Gabi891g00019 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Gabi891g00019 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 8 83 - -
Gabi891g00019 86 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 86 - -
Gabi891g00019 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
Gabi891g00019 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Gabi891g00019 86 SUPERFAMILY RNA-binding domain, RBD 6 84 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi891g00019 Gabi-Chr891 166890 175301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi891g00019 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 3.51e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi891g00019 - K13195 ccaj:109806644 137.117