Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi891g00015 ATGTCTGCAGCTTTGGATATGACCCTCGACGATATCATTAAGAACAACAAGAAATCCGGATCCGGCAACTCCAAGGGTCGCACCCGAGGATCCGGATCCGGACCGGGACCCGCTCGCCGCCTTCCCAACCGCGCCGCTAACCGTGCTGCACCGTATACCACTGCTAAGGCGCCGGAGACGGCGTGGCAGCATGACATGTATGCAGATCAGCCCGTGCACGCGGCAGCATATCCAGTTCAAGGTGCTCGAGCGTCTTCCATCGAAACGGGAACCAAGCTCTACATATCTAATTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATAATGTTCATTACGACAGGAGTGGGAGATCGAAGGGTACAGCTGAAGTAGTCTTCTCGCGACGAGCTGATGCTGTAGCTGCAGTAAAGAGGTACAACAATGTTCAACTAGATGGGAAACCAATGAAGGTAGAGATTGTGGGAACAAACATTGCTACACAGCATGCTGTGGCTCCTGCTGCAAATGGAGCTTTTGGAAATTCAAATGGAGTTCCCAGAAGTGGACAAGGGAGAAGTGGGGCATTTGGAAGGCTGCGTGGCGGAGGAGGTAGTGGCGGAGGAGGTCGAGGACGTGGCATTCGAAGGGGTCGAGGACGTGGAAGAGGTCGTGATGATTCGAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGTCAATGCAATTAAACTGA 765 0.5098 MSAALDMTLDDIIKNNKKSGSGNSKGRTRGSGSGPGPARRLPNRAANRAAPYTTAKAPETAWQHDMYADQPVHAAAYPVQGARASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHNVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATQHAVAPAANGAFGNSNGVPRSGQGRSGAFGRLRGGGGSGGGGRGRGIRRGRGRGRGRDDSKVSAEDLDADLEKYHAESMQLN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi891g00015 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Gabi891g00015 254 SMART FoP_duplication_2 180 254 IPR025715 -
Gabi891g00015 254 MobiDBLite consensus disorder prediction 183 254 - -
Gabi891g00015 254 FunFam THO complex subunit 4 84 241 - -
Gabi891g00015 254 CDD RRM_THOC4 91 165 - -
Gabi891g00015 254 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 252 - -
Gabi891g00015 254 MobiDBLite consensus disorder prediction 224 247 - -
Gabi891g00015 254 MobiDBLite consensus disorder prediction 14 30 - -
Gabi891g00015 254 SMART rrm1_1 92 164 IPR000504 GO:0003723
Gabi891g00015 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Gabi891g00015 254 Pfam C-terminal duplication domain of Friend of PRMT1 195 249 IPR025715 -
Gabi891g00015 254 MobiDBLite consensus disorder prediction 1 57 - -
Gabi891g00015 254 Gene3D - 78 236 IPR012677 -
Gabi891g00015 254 SUPERFAMILY RNA-binding domain, RBD 33 165 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi891g00015 Gabi-Chr891 108937 112827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi891g00015 90 165 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.42e-09 55.5