Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi891g00014 ATGTCTGCAGCTTTGGATATGACCCTCGACGATATCATTAAGAACAACAAGAAATCCGGATCCGGCAACTCCAAGGGTCGCACCCGAGGATCCGGATCCGGACCGGGACCCGCTCGCCGCCTTCCCAACCGCGCCGCTAACCGTGCTGCACCGTATACCACTGCGCCGGAGACGGCGTGGCAGCATGACATGTATGCAGATCAGCCCGTGCACGCGGCAGCATATCCAGTTCAAGGTGCTCGAGCGTCTTCCATCGAAACGGGAACCAAGCTCTACATATCTAATTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATAATGTTCATTACGACAGGAGTGGGAGATCGAAGGGTACAGCTGAAGTAGTCTTCTCGCGACGAGCTGATGCTGTAGCTGCAGTAAAGAGGTACAACAATGTTCAACTAGATGGGAAACCAATGAAGGTAGAGATTGTGGGAACAAACATTGCTACACAGCATGCTGTGGCTCCTGCTGCAAATGGAGCTTTTGGAAATTCAAATGGAGTTCCCAGAAGTGGACAAGGGAGAAGTGGGGCATTTGGAAGGCTGCGTGGCGGAGGAGGTAGTGGCGGAGGAGGTCGAGGACGTGGCATTCGAAGGGGTCGAGGACGTGGAAGAGGTCGTGATGATTCGAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGTCAATGCAATTAAACTGA 759 0.5099 MSAALDMTLDDIIKNNKKSGSGNSKGRTRGSGSGPGPARRLPNRAANRAAPYTTAPETAWQHDMYADQPVHAAAYPVQGARASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHNVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATQHAVAPAANGAFGNSNGVPRSGQGRSGAFGRLRGGGGSGGGGRGRGIRRGRGRGRGRDDSKVSAEDLDADLEKYHAESMQLN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi891g00014 252 FunFam THO complex subunit 4 82 239 - -
Gabi891g00014 252 SMART FoP_duplication_2 178 252 IPR025715 -
Gabi891g00014 252 SUPERFAMILY RNA-binding domain, RBD 35 163 IPR035979 GO:0003676
Gabi891g00014 252 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 250 - -
Gabi891g00014 252 MobiDBLite consensus disorder prediction 14 30 - -
Gabi891g00014 252 MobiDBLite consensus disorder prediction 1 46 - -
Gabi891g00014 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Gabi891g00014 252 SMART rrm1_1 90 162 IPR000504 GO:0003723
Gabi891g00014 252 Pfam C-terminal duplication domain of Friend of PRMT1 193 247 IPR025715 -
Gabi891g00014 252 Gene3D - 73 234 IPR012677 -
Gabi891g00014 252 MobiDBLite consensus disorder prediction 181 252 - -
Gabi891g00014 252 CDD RRM_THOC4 89 163 - -
Gabi891g00014 252 MobiDBLite consensus disorder prediction 222 245 - -
Gabi891g00014 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi891g00014 Gabi-Chr891 108935 112828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi891g00014 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.42e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi891g00014 K12881 - gmx:100783362 295.049