Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi891g00013 ATGTCTGCAGCTTTGGATATGACCCTCGACGATATCATTAAGAACAACAAGAAATCCGGATCCGGCAACTCCAAGGGTCGCACCCGAGGATCCGGATCCGGACCGGGACCCGCTCGCCGCCTTCCCAACCGCGCCGCTAACCGTGCTGCACCGTATACCACTGCTAAGGCGCCGGAGACGGCGTGGCAGCATGACATGTATGCAGATCAGCCCGTGCACGCGGCAGCATATCCAGTTCAAGGTGCTCGAGCGTCTTCCATCGAAACGGGAACCAAGCTCTACATATCTAATTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATAATGTTCATTACGACAGGAGTGGGAGATCGAAGGGTACAGCTGAAGTAGTCTTCTCGCGACGAGCTGATGCTGTAGCTGCAGTAAAGAGGTACAACAATGTTCAACTAGATGGGAAACCAATGAAGGTAGAGATTGTGGGAACAAACATTGCTACACAGCATGCTGTGGCTCCTGCTGCAAATGGAGCTTTTGGAAATTCAAATGGAGTTCCCAGAAGAAGTGGGGCATTTGGAAGGCTGCGTGGCGGAGGAGGTAGTGGCGGAGGAGGTCGAGGACGTGGCATTCGAAGGGGTCGAGGACGTGGAAGAGGTCGTGATGATTCGAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGTCAATGCAATTAAACTGA 753 0.5086 MSAALDMTLDDIIKNNKKSGSGNSKGRTRGSGSGPGPARRLPNRAANRAAPYTTAKAPETAWQHDMYADQPVHAAAYPVQGARASSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHNVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATQHAVAPAANGAFGNSNGVPRRSGAFGRLRGGGGSGGGGRGRGIRRGRGRGRGRDDSKVSAEDLDADLEKYHAESMQLN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi891g00013 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Gabi891g00013 250 Gene3D - 75 232 IPR012677 -
Gabi891g00013 250 MobiDBLite consensus disorder prediction 185 250 - -
Gabi891g00013 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Gabi891g00013 250 Pfam C-terminal duplication domain of Friend of PRMT1 188 245 IPR025715 -
Gabi891g00013 250 CDD RRM_THOC4 91 165 - -
Gabi891g00013 250 MobiDBLite consensus disorder prediction 220 243 - -
Gabi891g00013 250 MobiDBLite consensus disorder prediction 14 30 - -
Gabi891g00013 250 Coils Coil 232 250 - -
Gabi891g00013 250 SMART FoP_duplication_2 180 250 IPR025715 -
Gabi891g00013 250 SMART rrm1_1 92 164 IPR000504 GO:0003723
Gabi891g00013 250 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 248 - -
Gabi891g00013 250 SUPERFAMILY RNA-binding domain, RBD 33 165 IPR035979 GO:0003676
Gabi891g00013 250 MobiDBLite consensus disorder prediction 1 57 - -
Gabi891g00013 250 FunFam THO complex subunit 4 84 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi891g00013 Gabi-Chr891 108934 112829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi891g00013 90 165 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.33e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi891g00013 K12881 - gmx:100783362 294.664