Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi88g00003 ATGAGAAGACCCAAATCGAAGGACTTTCGGAAGCAACAACGAGTCTCAGAAGAGAACGAGATAAAATTGTTGGACTCATGGATCCAAAATCAGCAACCAGAATCGGGTTCCAACCCTATATCGCTTCCTCCTCTCCCCAAAAATGCCCCTGTTGGGCGCTTCGATGACAACAGCTTCTCGCGCTATGCGGGTGTGGCGAGGTTTGAGCAGTTGCCACTCTCCAAGAAAACCAAGGATGGCTTGCGAGAAGTCAAGTTTGTCACCATGACCGATATTCAGAGGGCTTCTCTTCCTCATGCACTTTGTGGCCGTGATATTCTTGGTGCTGCCAAAACTGGGTCTGGAAAAACCCTTGCTTTCATTATCCCGGTGTTGGAAAAATTACATAGAGAGAGATGGGGCCCTGAAGATGGGGTTGGCAGCATCATCATATCCCCTACAAGAGAATTAGCTGGCCAGCTATTTGATGTGTTGAAGTCCATTGGCAAGTACCATAATATTAGTGCTGGCCTGCTTATTGGTGGTCGCAAGGATGTTGACATGGAGAAAGAACGTGTCAATGAGCTCAACATATTGATCTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGATTTTGGTACTAGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCTCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCAGCAACTCAAACGAAGTCAATTCAAGATCTTGCAAGACTTAGTTTGAAGGATCCAGAGTATCTGAGCGTACATGAAGAGTCTGTGACTGCCACTCCTACTCTATTGAAGCAAATTGTGATGATTGTTCCTCTGGATCAAAAGTTAGACATGCTGTGGAGTTTCATAAAGACACATCTTCAGTCAAAAACACTTGTCTTTCTTTCTAGCTGTAAACAGGTAAAATTCGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCGTTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCTATATATTCAGAGTTTTGTGAGAAGCGCTCGGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCTGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGGTGGAAAGTCAGTTTTATTTCTATTGCCTTCAGAAATTCAAATGCTTGAAAAGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTAACAAGCCAAGGAAAGAACTGGTGCAACCAGTTTCTGGTTTGATGGCATCTTTATTGGTCAAGTACCCAGACCTCAAGCATTGGGCTCAAAGGGCTTTCGTCACATATTTGAAATCCATCCATATCCAAAAGGATAAAGAGATCTTTGATGTCATGAAACTACCTATTGATGAGTATTCAGCATCATTAGGTTTGCCAATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGTCTCAACAAAATCAATTCTAGTTGAGCCAGAAGATTCAAACATGGAAAAGGTTTTGGAGGTTTCTAGAAAGAAGCTAGACACAACTGTTTTCAACAATGAGGAAACTGAAAATGATCTTCTTCAGGCAGCTGATACCTCAACTGAAGGCGAAATGAAGTCATCTGAAAATGGAGAAATAATACCAGCAACTCGGGTATTGAAGAAAAAGAAGCTCAAGATTAATGTACATAGACCACTGGGGACTAGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCGTTAGCCAGGATTGCTGAAACACAAAGTGGCCAGGAAACATCGCTGCTTGACTTAGAACAAAAAGCTGAATACTATAGAAGGATGCGAGAGGATTTGAAGAAGGCAGATAAGGAAGACAAGCTTGTAGAGCGTCAACGACGTAGAGAAAAAAGAATCAAGCAGAAGATGAAGTTGAAGGCAGGAGATGACCAAGTTGATATTTCTGGTTCAGAAGAAGACGAGACAGTAGATAGACGGCATAAAAAGAGGAAAGTATACTTTGATAGTGACAGCGACAATGATGAGGGTAAAAGAAATGAAATCACGGGGAATGCAGGTGCTAGTGCTGGCTCCATTACTTTGGAGGAGCAAGAAGCTCTAGCTTTGAAATTGTTAAATTCAATGCACTCGTAG 2235 0.4215 MRRPKSKDFRKQQRVSEENEIKLLDSWIQNQQPESGSNPISLPPLPKNAPVGRFDDNSFSRYAGVARFEQLPLSKKTKDGLREVKFVTMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLHRERWGPEDGVGSIIISPTRELAGQLFDVLKSIGKYHNISAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQILVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKLKAAKVPVHFNKPRKELVQPVSGLMASLLVKYPDLKHWAQRAFVTYLKSIHIQKDKEIFDVMKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDSNMEKVLEVSRKKLDTTVFNNEETENDLLQAADTSTEGEMKSSENGEIIPATRVLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARIAETQSGQETSLLDLEQKAEYYRRMREDLKKADKEDKLVERQRRREKRIKQKMKLKAGDDQVDISGSEEDETVDRRHKKRKVYFDSDSDNDEGKRNEITGNAGASAGSITLEEQEALALKLLNSMHS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi88g00003 744 SMART ultradead3 85 289 IPR014001 -
Gabi88g00003 744 SMART helicmild6 325 408 IPR001650 -
Gabi88g00003 744 Coils Coil 629 659 - -
Gabi88g00003 744 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Gabi88g00003 744 MobiDBLite consensus disorder prediction 667 723 - -
Gabi88g00003 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 274 IPR027417 -
Gabi88g00003 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 424 IPR027417 -
Gabi88g00003 744 Gene3D - 283 528 IPR027417 -
Gabi88g00003 744 CDD DEADc_DDX10 77 275 - -
Gabi88g00003 744 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 452 IPR001650 -
Gabi88g00003 744 PANTHER RNA HELICASE 63 582 - -
Gabi88g00003 744 SMART DUF4217_3 447 510 IPR025313 -
Gabi88g00003 744 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Gabi88g00003 744 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Gabi88g00003 744 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Gabi88g00003 744 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Gabi88g00003 744 MobiDBLite consensus disorder prediction 669 713 - -
Gabi88g00003 744 CDD SF2_C_DEAD 286 417 - -
Gabi88g00003 744 MobiDBLite consensus disorder prediction 28 47 - -
Gabi88g00003 744 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Gabi88g00003 744 Gene3D - 54 278 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi88g00003 Gabi-Chr88 27574 40951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi88g00003 65 429 Eukaryotic Initiation Factors Gene Family AT3G19760 28.649 3.59e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi88g00003 K14776 - gmx:100792106 1280.39