Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi888g00006 ATGTTAGATCTTAATCTGAATGCCGATTCGACTCAGAACGATAACTCGCTCGTGCTGTTGGACAAGTTTCCCGAAGCTTCTTCGGGGACATCGAATTCCTCCATCGTGAATGCGGACGGGTCCAGCAACGGAGGAGGCGACGACGACTCGTGCTCCACACGCGCTGGCAACGTGTTTACCTTCAATTTCGGTATCCTTAAAGTTGAAGGCGGGAACGACGTCGTGGCAACTAAGGAGCTGTTTCCGGTGAGCACCGGGAACTGGCAGGGGCAGCCTTCGACGTCGTCGTTTCCCGCAAGGAAGAGCTTGGTGGATCTCTCGTTGGATCATCATCGAGGCGAAAACAGTGAGATGAAGATGCTTCAGGTTCAACAACAGCCTCAGGTCAAGAAGAGTAGGAGGGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATCAAGTTCAGGGGTCTTGATGCTGACATCAATTTCAATCTCATTGATTATGAGGACGATCTGAAACAGATGAAGAATCTTTCCAAGGAGGAATTCGTGCACATACTCCGTCGCCACAGCACCGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGAAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAATTGCAACGGAAGAGAGGCAGTGACTAACTTTGAGCCAAGCACATATGAAAGCGAGATGAAACCTGAAGCTATTAATGAAGGTGGCAGTCACAATCTTGACCTCAATCTGGGCATAGCTACCCCAGGACATGGTCCCAAAGAAAACGGGGGGCATCTTCAGTTCCAGTCCGTCCCATACAACTTGCATCCTGGAAGAAGTTCAAGGATGGAGGCTAATGTTAATTCAGTAATTGGTGATCCATCTTTGAAAGGGGTGGTTGTAACGGAAGAGCGTCCTTCTGTTTGCAATGCCACATATTCCAGTTTCTTTCCCAATGAGGAAGGAGCAGAGAGAATTGGTATAGACCCTTCGAAAGGACTCCCCAACTGGGTGTGTCAAACGCGTGGCCAGGTCACAACTACCCGAGTACCACCTTTCTCTTCAGCAGCATCATCAGGATTCTCAGTTTCAGCTACCTTTCCATCGACTGCCATCTTTCCAACGAAACCTATGAACTCAATTCCGCAGAGCCTATGTTTTGCTTCAACCAGTACACCTGGTAGCAATGCATCTCAATACTATTACCAGGTGAAGTCTCTGCAGGCACCACCCTAG 1434 0.4909 MLDLNLNADSTQNDNSLVLLDKFPEASSGTSNSSIVNADGSSNGGGDDDSCSTRAGNVFTFNFGILKVEGGNDVVATKELFPVSTGNWQGQPSTSSFPARKSLVDLSLDHHRGENSEMKMLQVQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLIDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAINCNGREAVTNFEPSTYESEMKPEAINEGGSHNLDLNLGIATPGHGPKENGGHLQFQSVPYNLHPGRSSRMEANVNSVIGDPSLKGVVVTEERPSVCNATYSSFFPNEEGAERIGIDPSKGLPNWVCQTRGQVTTTRVPPFSSAASSGFSVSATFPSTAIFPTKPMNSIPQSLCFASTSTPGSNASQYYYQVKSLQAPP 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi888g00006 477 SUPERFAMILY DNA-binding domain 233 292 IPR016177 GO:0003677
Gabi888g00006 477 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 MobiDBLite consensus disorder prediction 26 49 - -
Gabi888g00006 477 MobiDBLite consensus disorder prediction 116 142 - -
Gabi888g00006 477 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 SUPERFAMILY DNA-binding domain 141 198 IPR016177 GO:0003677
Gabi888g00006 477 Pfam AP2 domain 233 282 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Gabi888g00006 477 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700|GO:0006355
Gabi888g00006 477 Gene3D AP2/ERF domain 141 199 IPR036955 GO:0003700|GO:0006355
Gabi888g00006 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 323 - -
Gabi888g00006 477 CDD AP2 142 197 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Gabi888g00006 477 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi888g00006 Gabi-Chr888 140057 144023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi888g00006 72 317 AP2-EREBP Transcription Factor Family AT4G36920 67.194 1.30e-97 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi888g00006 AP2 3.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi888g00006 K09284 - gmx:100777102 773.081