Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi888g00002 ATGGGTTGCTTTCGTCTTAAAGGAAAATCACGCAAAAAATCGGACAGCAACCTCTCTAATAGCCGTGTCGAGAAGCCTATCATTCTCACTGTTGCTGAAAAAGTCAAAGTTGATTTGAATGTAAATGGAGAAGGAGAAGATAATTCTAAGGATGATAAACTTTATCTGGACGTGAAGAATTTGAATTTAAATGAGGTTTCCAAGGATGGAAAACCAAACGGTTGCCGGGCACAGACGTTTACGTTCGATGAGCTTGTAGCTGCCACAGGGAATTTTAGGTCAGATTGCTTTGTGGGCGAAGGAGGGTTCGGCAAGGTTTATAAGGGGCACATAGAGAAAATAAACCAGGCTGTAGCTATAAAGCAACTCGACCCTCATGGGCTTCAAGGAATTAGGGAATTTGGTGTTGAAGTTTTGACACTGAGTTTGGCAGACCACCATAATCTTGTCAAATTAATTGGGTTTTGTGTGGAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTGCATGATCTTTGGCCCGGAAGAAAACCACTTGATTGGAATACTAGAATGAGAATAGCAGCTGGTGCAGCTAGAGGTTTGGAGTATATGCATGATAAAATGAAGCCTCCCATCATATACCGTGACCTGAAATGCTCCAACATTTTGTTAGGCGAGGGATATCATCCCAAGTTATCTGATTTTGGCTTGGCAAAATTAGGCCCAAGTGGTGATAAGACTCATGTTTCAACAAGGGTTATGGGGACATATGGGTACTGTGCACCAGATTATGCAATGACTGGCCAATTGACATTCAAGTCTGATATTTATAGCTTCGGGGTTGTTCTTTTGGAGATAATCACAGGCAGGAAGGCCTTCGACCAAACAAAATCTGCTAAAGAAAAATATCTAGTTGTATGGGCAAAGTCCTTACTCAAAGACCGGAGAAGATTCTCAGAGATGGCTGATCCATTGCTTCAAGGTCAATATCCAGTCAGAGGTTTGTATCAAGCTCTTGCTATTGCTGCTATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTCCTATAGCTGATGTGGTTACAGCTCTAAATTACCTTGCTTCCCAGAAATATGATCCCCAAATTCACCCAATACAAAGCTCTACAAGAGGTCCATCTTCACCAAGAGGGAGATGTAGTCGTCATAGACGTATTAGTAGTTGTGGTTCTGAGACAGACAGATCTGGAAGTGGAGATTAG 1248 0.4247 MGCFRLKGKSRKKSDSNLSNSRVEKPIILTVAEKVKVDLNVNGEGEDNSKDDKLYLDVKNLNLNEVSKDGKPNGCRAQTFTFDELVAATGNFRSDCFVGEGGFGKVYKGHIEKINQAVAIKQLDPHGLQGIREFGVEVLTLSLADHHNLVKLIGFCVEGEQRLLVYEYMPLGSLENHLHDLWPGRKPLDWNTRMRIAAGAARGLEYMHDKMKPPIIYRDLKCSNILLGEGYHPKLSDFGLAKLGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLEIITGRKAFDQTKSAKEKYLVVWAKSLLKDRRRFSEMADPLLQGQYPVRGLYQALAIAAMCVQEQPNMRPPIADVVTALNYLASQKYDPQIHPIQSSTRGPSSPRGRCSRHRRISSCGSETDRSGSGD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi888g00002 415 SMART serkin_6 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi888g00002 415 MobiDBLite consensus disorder prediction 377 415 - -
Gabi888g00002 415 Gene3D Phosphorylase Kinase; domain 1 77 168 - -
Gabi888g00002 415 Pfam Protein tyrosine and serine/threonine kinase 98 365 IPR001245 GO:0004672|GO:0006468
Gabi888g00002 415 PANTHER OS07G0668900 PROTEIN 49 377 - -
Gabi888g00002 415 FunFam probable serine/threonine-protein kinase RLCKVII 64 168 - -
Gabi888g00002 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Gabi888g00002 415 MobiDBLite consensus disorder prediction 377 391 - -
Gabi888g00002 415 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Gabi888g00002 415 FunFam Serine/threonine-protein kinase PBS1 169 384 - -
Gabi888g00002 415 SUPERFAMILY Protein kinase-like (PK-like) 78 386 IPR011009 -
Gabi888g00002 415 CDD STKc_IRAK 98 367 - -
Gabi888g00002 415 Gene3D Transferase(Phosphotransferase) domain 1 169 384 - -
Gabi888g00002 415 ProSiteProfiles Protein kinase domain profile. 92 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi888g00002 Gabi-Chr888 20958 23932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi888g00002 42 371 Glycoside Hydrolase AT3G07070 59.403 8.77e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi888g00002 PK_Tyr_Ser-Thr 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi888g00002 - - gmx:100794680 629.787