Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi884g00012 ATGGAAGATAAACTAGCAAGAACAAGTGAAGGACAACCCATAAGATGTAAAGCGGCGGTATGTCGCAAACCAGGTGAGCCACTGATTATTGAGGAGATCATTGTTGCGCCCCCAATGCCTCGTGAAGCCAGGATCCGTATTATATGTACCTCTCTCTGTCACAGCGATATCACTTTTTGGAAGATGCAGCCTCCTGGAATTTGTCCAAGAATTCTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTAGGAGAGGATGTAACTGAAGTCACAAAAGGAGATATGGTTATCCCAGTTTTCTTACCTGATTGTGGGGAGTGTATAGATTGCAAATCAACAAAGAGCAACTATTGTTCAAAGTTTCCTTTCCATGTGTCTCCTTGGATGCCTAGATATGCTAACACTAGATTCACGGATCTAAAAGGAGAGATCATACACCATTTCCTCTTTGTTTCTAGTTTTAGCGAGTACACTGTGGTTGACATTGCCAATCTAACCAAGATTGATCCGGCAATTCCTCCCAACAAAGCATGTCTCCTCAGTTGTGGTGTATCAACTGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGTTCTACAGTAGCTATTTTTGGGCTAGGATGTATTGGATTAGCTGTAGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGATGTCAACCCAGAAAAATCTGAAATTGGAAAAAAGTTTGGACTCACAGACTTTATCCATGCTGGAGAATGTGAAAACAAATCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTCGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATTTGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGATCGAAGTTGAGCCTTAGCTCTAGTGAGGTCCTTGTTCAGGGGAAAAGTCTCATGGGGTCCTTATTTGGAGGACTGAAACCCAAGTCTCATGTCCCCATTCTCCTTAAACGCTACATGGACAAGGAACTGAAATTGGATGAGTTTGTCACACATGAAGTGGAGTTTAAGGACATCAATAAAGCTTTTGATTTATTGATTAAAGGACAGTGTCTTCGATGTGTCATTTGGATGGACAAATGA 1161 0.4324 MEDKLARTSEGQPIRCKAAVCRKPGEPLIIEEIIVAPPMPREARIRIICTSLCHSDITFWKMQPPGICPRILGHEAIGVVESVGEDVTEVTKGDMVIPVFLPDCGECIDCKSTKSNYCSKFPFHVSPWMPRYANTRFTDLKGEIIHHFLFVSSFSEYTVVDIANLTKIDPAIPPNKACLLSCGVSTGVGAAWRTAGVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDVNPEKSEIGKKFGLTDFIHAGECENKSVSQVIIEMTGGGADYCFECVGMASLVHEAFASCRKGWGKTIVLGVDKPGSKLSLSSSEVLVQGKSLMGSLFGGLKPKSHVPILLKRYMDKELKLDEFVTHEVEFKDINKAFDLLIKGQCLRCVIWMDK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi884g00012 386 Gene3D - 187 327 - -
Gabi884g00012 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 187 327 - -
Gabi884g00012 386 SUPERFAMILY GroES-like 9 193 IPR011032 -
Gabi884g00012 386 Gene3D - 19 379 - -
Gabi884g00012 386 PANTHER ALCOHOL DEHYDROGENASE 11 382 - -
Gabi884g00012 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 172 347 IPR036291 -
Gabi884g00012 386 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Gabi884g00012 386 Pfam Zinc-binding dehydrogenase 211 331 IPR013149 -
Gabi884g00012 386 FunFam Alcohol dehydrogenase 6 19 198 - -
Gabi884g00012 386 SUPERFAMILY GroES-like 335 383 IPR011032 -
Gabi884g00012 386 Pfam Alcohol dehydrogenase GroES-like domain 41 167 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi884g00012 Gabi-Chr884 92218 94958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi884g00012 41 333 Monolignol Biosynthesis Gene Families AT4G37990 23.333 6.45e-10 58.2