Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi884g00004 ATGCAGGCTATCTGGTTGATGTTGATGTTGTTGTTGTTGGTGGCTATTGCGTTGGGGAATTCAGACATAGATGCACTCCTTGAACTCAAGAAGAGTATTCAGAAAGACCCTTCTGGATTAGTTGTTAATTCTTGGGATTCCAAATCTTTAGATTCCGATGGATGTCCTCAGAACTGGTATGGGATATTGTGTACTGAAGGCAATGTTATATCAATCACTCTTGACAATGCTGGTTTGGTTGGAGAGTTTAATTTCCTTGCAATTAGTGGCCTTACAATGCTTCGCAACTTGTCAGTTGTGAACAACCAGTTCACAGGAAGTATCTTAAATATTGGTCCAATGGAATCACTTGAAAATTTTGATTTGTCCCTCAACAAGTTTAGTGGGTCCTTACCCTCTAACTTTGTTGAATTGAGTAATTTAGTGTATCTGAATCTTTCTTCAAATGAATTTGGAGGTACTCTTCCTATTGGGTTTAACAAACTTGAGCAGTTGAAATATTTAGATTTGCACACTAATAACTTTTCTGGGGATATTATGCATATCTTTTCTCAGATGGGCAGTGTGCTACATGTTGACTTAAGCAGCAACAGTTTTTCTGGTACCCTGGATTTAGGACTTGGAGATGACTCCTTTCTCTCCTCAATTCAATATTTAAATGTTAGCCACAATTCCTTGATTGGTGAGCTATTTGCTCATGATGGTATACCATACCTTGACAATTTAGAGGTGTTTGATGCTAGTCATAATCAGTTAGTGGGTAATATACCTTCCTTCACATTTGTGGTATCTCTAGGGATTCTTCGACTTGCATGCAACCAGTTGTCAGGTTCACTGCCAGAAGCTTTATTGATGGAAAGTTCAATGATGTTGTCCGAACTGGATCTTAGTCAAAACAAGCTTGAAGGTCCCCTTGGAAGTATTACTTCAGTGACTCTGAGGAAGCTTAATATATCTTCAAACAAATTGTCAGGCCCCTTACCTCTCAAGGTAGGCCACTGTGCCATCATAGATTTGAGTAATAACAGGCTGTCAGGTAATTTGTCAAGGATCCAGTATTGGGGTAATTATGTGGAAGTTATTCAGTTAAGTACAAATTCATTGACAGGAATGCTTCCAAATGAAACTACTCAATTTTTAAGGTTAACAGCACTTAAGGTATCCAATAACTCATTGGAGGGTTTTCTCCCACCAGTCTTGGGAACATACCCAGAACTAAAAGAGATTGATCTTAGCCTCAACCAGCTTTCTGGGTTCCTCCTACCAAGCCTTTTCACCTCAACCAAATTGACTAATCTCAACCTCTCGAACAATCAGTTTTCTGGATCAATTGGTATTCAACTTCAAATTCCAAATAATTCATTAGTTTCAGCTGACAATTTTAGTTTGGTGTTTCTTGATCTTTCATACAACAACTTGAGCGGGCTTATTCCTTCAAAAATTAGTAAGCTTCACAATTTGGCATATCTCAATCTGTGTAACAACAAATTGGAAGGTGCTATTCCAGATGACCTTCCAGCTGAATTGAGAGGATTCAATGTGTCCTTCAATAATCTTTTTGGCGTTGTACCAGACAACTTAATGCAGTTTCCTGAATCAGCATTTCATCCAGGAAATACTATGCTGATATTTCCACATTCACAATTATCACCAAAAGATACTTCCAACCTAGGTTTTAGGGAACATGGGTTACATAAAAAATCTGTAACTAGGAGTGCCTTGGTTGCATGTTTGGTTATTGGTGCTTTGGTGATGGCTTTTTTGGGTATAATGATTTATTATAGGGTTCATCAGCAAAAAGAAAAGACTTCTAAACAAAATGGAGCAAGAGGCATCACCGAAGAGAGTTCTTCCACATCAAATAGAGAGAAACCTAACAGAAATTTGGAAGCATTGCCACCTTCTCAAAGGGGGTCTGCTGATGATGAGAGAAACATTCATCCAATGGTCAAGAAGCCAAAAGATCTTGGCCCTTCTGAATTAGTTAAGAATGAGGAAGGAACTTCTTCTTCAAAGTCTATTTTGTCCGCTTCAAATCCTTCATCTTCTAAAAGCCACCAGTTTGAGAATCCTGGTTCCTTCAAAGCAACCTCTCCAGATAAACTGGTTGGGGACTTGCATCTATTTGATGGGTCATTGACGCTGACAGCGGAAGAACTTTCATGTGCTCCAGCGGAAGTTATTGGCACGAGTTGTCATGGAACACTCTACAAAGCTACACTCAACTCTGCTCATGCATTGGCTGTCAAATGGTTAAGAGAAGGAATAACTAAAGGAAAAAAAGAGTTTGCACGGGAAGTAAAGAAACTTGGGACTATCAAGCATCCAAGCCTGGTTTCTGTTCAGGGTTACTACCTGGGGCCAAAGGATCACGAGAGACTGATTATATCAAATTACATGAATGCACAATCTTTGGACATTTATCTCCATGAGCCAGATAAAAGAAGTCTCCATCCTTTGTCTCTTGATGAAAGGCTCAGGGTGGCTGTAGAGGTTGCGCGATGTCTGCATTACCTACACAATGAGAAAGCCATACCTCATGGCAATCTTAAATCCACAAACATTCTACTAGAAAATCCTAACAGAAATGCCTTGCTCACTGACTATAGCCTGCACCGAATACTCACTGCTTCTGGTACTGCTGAGCAAGTTCTGAATGCTGGTGCACTTGGTTATCGACCTCCTGAGTTTGCTAGATCAAACAAACCATGCCCTTCCTTGAAGAGTGATGTCTATGCATTTGGTGTTATCTTGTTAGAGCTCCTAACAGGAAGAAATCCTGGTGAAATCATTTCTGGGATTCCAGGGGTGGTTGAATTAACAGAATGGGTTATGTTTTTAGCTGAACAAGATCGTTCTAGCCAGTGTTTTGACAAGTTTCTTGTGGAAAAGCATAATGGAGAAGGATCATCTAGAATACTTGATGAAATGCTGAAGGTGGCTCTTAGATGCACTCTTTCAGCATCTGAGAGGCCTGATATGAAAACGGTCTTTGATGATCTTTCAACAATAAGGTAG 3018 0.397 MQAIWLMLMLLLLVAIALGNSDIDALLELKKSIQKDPSGLVVNSWDSKSLDSDGCPQNWYGILCTEGNVISITLDNAGLVGEFNFLAISGLTMLRNLSVVNNQFTGSILNIGPMESLENFDLSLNKFSGSLPSNFVELSNLVYLNLSSNEFGGTLPIGFNKLEQLKYLDLHTNNFSGDIMHIFSQMGSVLHVDLSSNSFSGTLDLGLGDDSFLSSIQYLNVSHNSLIGELFAHDGIPYLDNLEVFDASHNQLVGNIPSFTFVVSLGILRLACNQLSGSLPEALLMESSMMLSELDLSQNKLEGPLGSITSVTLRKLNISSNKLSGPLPLKVGHCAIIDLSNNRLSGNLSRIQYWGNYVEVIQLSTNSLTGMLPNETTQFLRLTALKVSNNSLEGFLPPVLGTYPELKEIDLSLNQLSGFLLPSLFTSTKLTNLNLSNNQFSGSIGIQLQIPNNSLVSADNFSLVFLDLSYNNLSGLIPSKISKLHNLAYLNLCNNKLEGAIPDDLPAELRGFNVSFNNLFGVVPDNLMQFPESAFHPGNTMLIFPHSQLSPKDTSNLGFREHGLHKKSVTRSALVACLVIGALVMAFLGIMIYYRVHQQKEKTSKQNGARGITEESSSTSNREKPNRNLEALPPSQRGSADDERNIHPMVKKPKDLGPSELVKNEEGTSSSKSILSASNPSSSKSHQFENPGSFKATSPDKLVGDLHLFDGSLTLTAEELSCAPAEVIGTSCHGTLYKATLNSAHALAVKWLREGITKGKKEFAREVKKLGTIKHPSLVSVQGYYLGPKDHERLIISNYMNAQSLDIYLHEPDKRSLHPLSLDERLRVAVEVARCLHYLHNEKAIPHGNLKSTNILLENPNRNALLTDYSLHRILTASGTAEQVLNAGALGYRPPEFARSNKPCPSLKSDVYAFGVILLELLTGRNPGEIISGIPGVVELTEWVMFLAEQDRSSQCFDKFLVEKHNGEGSSRILDEMLKVALRCTLSASERPDMKTVFDDLSTIR 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi884g00004 1005 Pfam Protein tyrosine and serine/threonine kinase 726 999 IPR001245 GO:0004672|GO:0006468
Gabi884g00004 1005 MobiDBLite consensus disorder prediction 609 626 - -
Gabi884g00004 1005 MobiDBLite consensus disorder prediction 663 694 - -
Gabi884g00004 1005 PANTHER OS07G0626500 PROTEIN 7 1004 - -
Gabi884g00004 1005 SUPERFAMILY Protein kinase-like (PK-like) 726 1001 IPR011009 -
Gabi884g00004 1005 SUPERFAMILY L domain-like 313 525 - -
Gabi884g00004 1005 ProSiteProfiles Protein kinase domain profile. 722 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi884g00004 1005 FunFam Nuclear pore complex protein NUP107 19 181 - -
Gabi884g00004 1005 MobiDBLite consensus disorder prediction 640 661 - -
Gabi884g00004 1005 SUPERFAMILY L domain-like 39 349 - -
Gabi884g00004 1005 Gene3D Ribonuclease Inhibitor 19 204 IPR032675 -
Gabi884g00004 1005 Gene3D Ribonuclease Inhibitor 210 552 IPR032675 -
Gabi884g00004 1005 Gene3D Phosphorylase Kinase; domain 1 728 800 - -
Gabi884g00004 1005 Gene3D Transferase(Phosphotransferase) domain 1 801 1005 - -
Gabi884g00004 1005 FunFam Leucine-rich repeat receptor-like protein kinase 707 799 - -
Gabi884g00004 1005 Pfam Leucine rich repeat N-terminal domain 20 64 IPR013210 -
Gabi884g00004 1005 MobiDBLite consensus disorder prediction 600 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi884g00004 Gabi-Chr884 41187 45649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi884g00004 1 984 Receptor kinase-like Gene Family AT1G55610 26.904 3.22e-70 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi884g00004 PK_Tyr_Ser-Thr 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi884g00004 - - gmx:100781394 1607.04