Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi879g00001 ATGGCAACTTTGCTGGGGAAGGAGCATGATTTGAACCTGAAGGAGACAGAGCTATGCCTAGGTTTGCCTGGTGGAAGCACTGAAGTGGAAACTCCAAGGGCCACCGGAAAAAGAGGGTTCTCTGAGACTCTTGATCTCAAGCTTAATCTTCATTCCAAGGATGATATGAATGAGAATTTGAAGGATGTCTCGAAGGAGAAGACCCTTCATAAGCCACCAGCTAAGGCACAAGTGGTTGGTTGGCCACCAGTGCGCTCGTACAGGAAGAACATTATGTCGCAAAAGATTAATAGTGAGGATGGCACTGAGAAGACAAAAAACAGCACTACTTCTGTGGCATTTGTCAAGGTTTCCATGGATGGCGCACCTTACCTTCGCAAAGTGGACTTGAAAATGTACAAAAGCTACCAGCAATTATCTGATGCGTTAGTCAAAATGTTCAGCTCCTTCACCGTAGGAAACTACGGGGCCCAAGGAATAATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGGTCTGAGTATGTGCCAACCTATGAAGATAAGGATAGTGATTGGATGCTTGTGGGTGATGTTCCATGGGAAATGTTTGTTGAATCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCGATTGGGCTCGCACCAAGAGCCAAGGAAAAATGCAAAAGCAGAAGCTGA 693 0.4517 MATLLGKEHDLNLKETELCLGLPGGSTEVETPRATGKRGFSETLDLKLNLHSKDDMNENLKDVSKEKTLHKPPAKAQVVGWPPVRSYRKNIMSQKINSEDGTEKTKNSTTSVAFVKVSMDGAPYLRKVDLKMYKSYQQLSDALVKMFSSFTVGNYGAQGIIDFMNESKLMDLLNRSEYVPTYEDKDSDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAKEKCKSRS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi879g00001 230 ProSiteProfiles PB1 domain profile. 112 212 IPR000270 GO:0005515
Gabi879g00001 230 SUPERFAMILY CAD & PB1 domains 107 211 - -
Gabi879g00001 230 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 217 IPR003311 GO:0005634|GO:0006355
Gabi879g00001 230 FunFam Auxin-responsive protein 107 222 - -
Gabi879g00001 230 Pfam AUX/IAA family 34 221 IPR033389 -
Gabi879g00001 230 Gene3D - 106 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi879g00001 Gabi-Chr879 19480 23098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi879g00001 104 220 B3 DNA Binding Superfamily AT4G23980 30.769 3.01e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi879g00001 AUX_IAA 3.1e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi879g00001 K14484 - gmx:100810762 382.874