Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi877g00003 ATGAGCAAACCCATAACTCACAGAAAAACCACCACCACCACCACCAAGCAGCCCCATAAGACAGAGAAACAACCCTCATGGGCTGTGGTAAGAGGCCTATTGACCTGTAGAAATGTCCAAGTGCAACAGCATCAGAAGAAGCAGCCACATCATGAAGAGAAACATCCTAGCCAGAACCGGGAGAAGAAGAAACCTCAAGAGGAACGTTTACCAGAAGAAAACAACAAGAAATGCAAGAAAATGAAATGTTCAGGTTCGCTTTGTAATAACACCAAGGTCGACATGGCTAGGCCTGAAACAGGAACCCCTGATGTCCACAAGAAAAGGGTCTCATTGGGTGGTGCTTGTAACAACAATAACGATGCTGCTTCTAATAGCAGATCCATGAAAGCCCCTCAAAACGAAATCAATAAAGGAGTTGTGTCTGCCTTTTCTTCTTCTTCTTCTACTTCATTGTCTGCAGCATCTTCTAATTCTTCTGTGGGTGGTTCTATTAGGAGAATACCATTCAGAAGACTCTCTGGTTGTTATGAGTGTAGAATGGTGGTTGACCCTGTTCTGGGTTTCACCAAAGACCCTTCTCTGAGAAGTAGCATTTGCTCTTGCCCTGACTGTGGTGAAATCTTCATGAAAGCTGAAAGCTTGGAGCACCATCAATCTGTTAAGCATGCAGTTTCTGAGCTTGGTCCTGAAGACACAAGCAAGAACATAGTAGAAATTATATTCCACTCTAGCTGGCTAAAGAAACAATCCCCAGTGTGCATAATAGACCGCATCCTTAAAGTACACAACAACCAGAAAACCATATGCAGATTCGAAGAGTACAGAGACTTCATCAAAGCCAAAGCCACAAAACTCTCAAAGAAACACCCTCGTTGCATAGCAGATGGCAACGAGCTACTTAGGTTCCACTGCACCACCTTTGTGTGTTCATTAGGCCTAAACGGGTCCTCCAACCTCTGCAACTCAACAACACAATGCAATGTCTGCAGCATAATCAAGAACGGTTTCAAGGCCACAGTGACAGGAGAATCCAACGGTGGAAAGGGTATCTTGACAACTGCATCAAGTGGGAAGGCACACGACAAAGCTGGGGTTTCAACCGATGAGAGTGAGAGTAACGAGAAGAGGGCAATGTTGGTTTGCAGGGTGATAGCAGGGAGGGTGAAGAAGAATGCAGAAGGTGGAAACATGGAGGAGTATGATTCTGTTGCTGGTTCTGTTGGGGCTTATGCAAATTTGGACGAGTTGTATGTTTTCAACCGTAGAGCTATATTGCCTTGTTTTGTTGTAATCTATAGAGGCTTTTGA 1311 0.4447 MSKPITHRKTTTTTTKQPHKTEKQPSWAVVRGLLTCRNVQVQQHQKKQPHHEEKHPSQNREKKKPQEERLPEENNKKCKKMKCSGSLCNNTKVDMARPETGTPDVHKKRVSLGGACNNNNDAASNSRSMKAPQNEINKGVVSAFSSSSSTSLSAASSNSSVGGSIRRIPFRRLSGCYECRMVVDPVLGFTKDPSLRSSICSCPDCGEIFMKAESLEHHQSVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCIIDRILKVHNNQKTICRFEEYRDFIKAKATKLSKKHPRCIADGNELLRFHCTTFVCSLGLNGSSNLCNSTTQCNVCSIIKNGFKATVTGESNGGKGILTTASSGKAHDKAGVSTDESESNEKRAMLVCRVIAGRVKKNAEGGNMEEYDSVAGSVGAYANLDELYVFNRRAILPCFVVIYRGF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi877g00003 436 MobiDBLite consensus disorder prediction 1 81 - -
Gabi877g00003 436 MobiDBLite consensus disorder prediction 45 80 - -
Gabi877g00003 436 MobiDBLite consensus disorder prediction 1 22 - -
Gabi877g00003 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 228 IPR013087 -
Gabi877g00003 436 Gene3D - 223 434 - -
Gabi877g00003 436 ProSitePatterns Zinc finger C2H2 type domain signature. 200 223 IPR013087 -
Gabi877g00003 436 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 80 433 - -
Gabi877g00003 436 SUPERFAMILY ADP-ribosylation 225 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi877g00003 Gabi-Chr877 32578 34429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi877g00003 165 434 C2H2 Transcription Factor Family AT1G75710 52.881 2.19e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi877g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi877g00003 - - qsa:O6P43_015222 592.808