Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi877g00002 ATGGATGGGAAGTCTAACACTCCGACATCTTCTCAGGAATTTCTCCGGCAGGTCCAAGCTGCCCTCAAGCGCAATCGCCCTCTCGGTACAACAACTCAATCAAATGGTATGAGGCCAAAGCGCTCCATGGTTGCTCAACGAAAGCTCATCAACGACGTGGTGGAATCTCAAAATGTAGGTGCACACAAGAAGGTCCACTTTTCAATTGCAACCAACAATGCTTCCCAGGATTTTAACTGTTTCGGTCAAACATGCTTACATTCGCTTACTATAAGAGATTTGGCCACTGAGTTGGAGAACTTATCATCTCATATTGATTCACTTGCATTGACAGAAACGGAGTCGTGGGCAAGCAGCCTACCTGAAGCATCGGTTGGATTCAATCAAGACTCGAAGCACCAAAATATTCAGCAGGCAGAGTCTGAAATAAGTTTGGTTTCTGAGGGAGGCAGAAGTTCTCTGTTGCCAAAGAGAACAATAGTTACTCAGGATCATCTGCAGCAATTCACAAACTTTTTAAGCCAACCAGCTACGCAATCTTTGGTAGTGGGACCCTCATATGCTACCACTACGTCAGTCCATTCAACTTCAGCTCCCATGCTGAATTCTATAACTCGTTCCAATGTTGATAGTGGCTCACATGTGGCTGCAGAACCTTGTGGGAACCTTACTGTTAATCCTCATCCTATGACTAAAGGGGTTAATAAATCACCAAATAATTCCCGAAAAGACACCAATAGAATGTCAATTGATCAGGCTGCAAGTACAGTCCAAGTTTGTAATACTCTTATTGATGCAGAGTTGACATTCAAAGAGAGTGAACCATCTAAGGAGCAGCAAGGATGCATATTAAAGGAAACTAGCATTTTGAAATATACTTCTTGTCATGATGACATGTTAACTAAAGGGAAAGAGTCTGCGGTTGTTACCAACATAAAGCCTCAGGCTCCAACCTCATCTTCGGATGTCAAGTTGGAGTCTTCTAGGCTAGAAAAATTGGAGAAAGCTACAAGTTCTAAACGATCATTAGGTGCTCGGAAAAGGAGCTATGACCCTGACTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAGAGGCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATATCATCAGACTGTACAATCTATGCCCTTAAAAAGATAAAGCTAAAGGGCCGTGATTATGCCACTGCGTATGGTTTTTGTCAAGAGATTGAGTATCTAAATAGTCTGAAAGGAAAGAATAATATTATACAGCTTATAGATTACGAGGTGACTAACAAGGCTTTGCATGAGGGAGTCATGAATGGTTCCTTCAGTAATAAGGATGGTAGAGTCAAGGATGATGAATATATATACATGGTTCTTGAACATGGGGAAATTGATTTGGCGCATATGTTGTCTCAGAAGTGGAAGGAACTGGATGGATGCAACCAGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATTCATGAAGAACGTATCGTGCATTCTGACTTGAAGCCAGCTAACTTCCTCCTCGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCCAAGGCAATAATGAGCGATACAACAAACATCGAACGGGATTCACAGGCTGGTACTCTAAGTTACATGTCACCTGAGGCATTTATGTGCAATGAGAGTGATGCGAATGGAAACATCATAAAGTGTGGTCGGTCATCAGATATCTGGTCCCTGGGCTGTATCCTTTATCAAATGGTGTATGGGAGAACACCTTTTTCAGATTACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCAAATCATGAAATTACGTATGAACCAGTTTCAAACCCATGGCTTCTGGATCTCATGAAAAGGTGTCTAGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGCTACTCCACCATCCTTTTCTTGTCCCTCCAGTTCCATGTCATCCATCTTTTTCCCAAGACCATACCTTTAAATTGCTACAATTTATTGCTAAAACTTGTACCAATGACCCAGACGCATCGCTGCTGTGCTGTCAGCTTCAACAGGTGCTTTGTGATCCCTTCAAGTTAATAACTCCTGACTCATTAAATTCAGCAGACGAACAGCGTAAATTGCTTTCCAGAATATCAGAACTCTGCGTTCAGCTGCAGGAACGATTGACTAATAGTGATGAAGGAAGCCAGTGA 2232 0.4198 MDGKSNTPTSSQEFLRQVQAALKRNRPLGTTTQSNGMRPKRSMVAQRKLINDVVESQNVGAHKKVHFSIATNNASQDFNCFGQTCLHSLTIRDLATELENLSSHIDSLALTETESWASSLPEASVGFNQDSKHQNIQQAESEISLVSEGGRSSLLPKRTIVTQDHLQQFTNFLSQPATQSLVVGPSYATTTSVHSTSAPMLNSITRSNVDSGSHVAAEPCGNLTVNPHPMTKGVNKSPNNSRKDTNRMSIDQAASTVQVCNTLIDAELTFKESEPSKEQQGCILKETSILKYTSCHDDMLTKGKESAVVTNIKPQAPTSSSDVKLESSRLEKLEKATSSKRSLGARKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIEYLNSLKGKNNIIQLIDYEVTNKALHEGVMNGSFSNKDGRVKDDEYIYMVLEHGEIDLAHMLSQKWKELDGCNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIERDSQAGTLSYMSPEAFMCNESDANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPNHEITYEPVSNPWLLDLMKRCLAWDRNERWRIPQLLHHPFLVPPVPCHPSFSQDHTFKLLQFIAKTCTNDPDASLLCCQLQQVLCDPFKLITPDSLNSADEQRKLLSRISELCVQLQERLTNSDEGSQ 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi877g00002 743 SUPERFAMILY Protein kinase-like (PK-like) 357 665 IPR011009 -
Gabi877g00002 743 FunFam Dual specificity protein kinase TTK 356 465 - -
Gabi877g00002 743 Pfam Protein kinase domain 363 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi877g00002 743 SMART serkin_6 363 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi877g00002 743 MobiDBLite consensus disorder prediction 228 245 - -
Gabi877g00002 743 PANTHER MIXED LINEAGE PROTEIN KINASE 27 688 - -
Gabi877g00002 743 ProSiteProfiles Protein kinase domain profile. 363 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi877g00002 743 CDD PKc_Mps1 361 656 IPR027084 -
Gabi877g00002 743 FunFam serine/threonine-protein kinase mph1 isoform X1 477 659 - -
Gabi877g00002 743 MobiDBLite consensus disorder prediction 222 245 - -
Gabi877g00002 743 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Gabi877g00002 743 Gene3D Phosphorylase Kinase; domain 1 356 442 - -
Gabi877g00002 743 Gene3D Transferase(Phosphotransferase) domain 1 478 658 - -
Gabi877g00002 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi877g00002 Gabi-Chr877 22842 27457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi877g00002 369 657 MAP Kinase Kinase Kinase AT4G08470 30.068 6.85e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Gabi877g00002 Pkinase 1.7e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi877g00002 K08866 - gmx:100795003 1095.11