LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi874g00002	ATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGCTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTTATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGTTTATAAAGAACAATGGACTATCAAGCCTCTCAGTTGGGGCGATAGACTCAGTTGGTTCCTACAAGAGTAGGGTGGCGGGTTTTGCCACTGCTCCTCCTTGTGGGACATTGTCTCTGATGACCGCGGGAAGAGGCCTAAAGAGGAAGATAGGTTGCATTGACGTGGCTACCCAGATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGAGGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTAATATTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATGATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAGGAGCAAGTTGTGGGCAGTTCCAATTCATCAGCAAGGTTTATATAACATGAGGGCTAACCTCTGTAAAGCATTTTGA	1839	0.4361	MRKRNLSRKLKVLGWLQLSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLYNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSEFIKNNGLSSLSVGAIDSVGSYKSRVAGFATAPPCGTLSLMTAGRGLKRKIGCIDVATQMGRKNKIEDDYVTGVRIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGNIQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHDVCVWIDALANAISHVRISEPKRSKLWAVPIHQQGLYNMRANLCKAF	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi874g00002	612	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	364	376	IPR008271	GO:0004672\|GO:0006468
	Gabi874g00002	612	Gene3D	Paired amphipathic helix	25	98	IPR036600	GO:0006355
	Gabi874g00002	612	ProSiteProfiles	PAH domain profile.	27	97	IPR003822	GO:0006355
	Gabi874g00002	612	Gene3D	Transferase(Phosphotransferase) domain 1	242	536	-	-
	Gabi874g00002	612	SUPERFAMILY	PAH2 domain	28	95	IPR036600	GO:0006355
	Gabi874g00002	612	PANTHER	SERINE/THREONINE-PROTEIN KINASE	238	525	-	-
	Gabi874g00002	612	SMART	serkin_6	251	501	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi874g00002	612	Pfam	Protein kinase domain	252	501	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi874g00002	612	SUPERFAMILY	Protein kinase-like (PK-like)	245	537	IPR011009	-
	Gabi874g00002	612	MobiDBLite	consensus disorder prediction	116	139	-	-
	Gabi874g00002	612	ProSiteProfiles	Protein kinase domain profile.	251	501	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi874g00002	612	Pfam	Paired amphipathic helix repeat	49	94	IPR003822	GO:0006355
	Gabi874g00002	612	CDD	STKc_CAMK	250	500	-	-
	Gabi874g00002	612	FunFam	Paired amphipathic helix protein SIN3	24	99	-	-
	Gabi874g00002	612	FunFam	Maternal embryonic leucine zipper kinase	243	522	-	-
	Gabi874g00002	612	ProSitePatterns	Protein kinases ATP-binding region signature.	257	280	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi874g00002	Gabi-Chr874	5623	9648	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi874g00002	241	501	EF-hand Containing Proteins	AT4G35310	43.750	2.40e-74	246

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Gabi874g00002		Pkinase	1.8e-65	CL0016
	TR	Others	Gabi874g00002		Pkinase	1.8e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi874g00002	-		-	gmx:100812729	619.772