Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi871g00009 ATGACCATGAAGTCTGAGTCACTGGATCATTGGAGGAATTACTTTAGCACTGCCAAGTCGTATGATATATTCGATATCATTCATCATTCCATCATGGTGGCAGCTTCGGATTTCCCCAAGGAGTTCAAGCTGAGGAGAGATGGGATTGCTGAGAGATTGTTCTCTTGCATGTTGACGACTAAATGTTTGGGGTGTGAAAGGGTGGATCATGAAGACGTTGATGATGGGCTTGCCCTTGAAGCAGGGTCAAGTGAAGATGTCCGTGAAGAGGTTTTGAGGATCGGAAACCTTCTTCTTAACTTTAAAGAAGAGTCGGACTCTGTCTTATTTGAGTCATTGAGGAGGCTCCAGCTGATGGAACTCAAAGTGGATCTTCTAGAGAAAACTAAGATTGGAAAGGCTGTCAATCCTCTCCGAAAGCATGGATCAAAGGATATTAGGCAACTCGCATCGACTCTTATTGATTGCTGGAAAGAAATGGTAGATGAGTGGTGCAAGGCTTCCACTACCACAGCTATTGCAGCTTCAGAAGGCACTCCAGATTCTGTAAATCCATCTGTTCTTGATGAAGGAGTAGGACTTCCTTCCCCTCCTATGGATGAAGGGGCTTTATTTCTTGCCCAAATTGGTTCAATTGAACTCTCACAGTTCTTCGATGGCATGGATGATTATGAAAATCCTCAACAGAGTGGACAATTCAAGTCTGAGGCTTCCATTAAGCCATCCATCACTGCCAAGGACAGTAAGAGTCAGCAACCAAGGAAAAATGAGGTTGCTGTGAGGCTAAATAAACCAGAAACTGTTGATAATTTCCCTGTCAGACCCCCAAAATCAACTATGCAGCGAAAAAGCAATATGGAGCCAAAGATGCAGCCAAAAATAGAGAACAATACAATCCCAAAGAAGCCTCCCATGATTCAGAAAGATAAATCCAAGTTTTCAGATGAAGAAGCTGCAGTCCAAGTAAAACTAGAGGCCACTAAGAGGAAAATTCAGGAGCGTTATCAACGAGTTGAAAATGCTAAGAGGCAGAGGACAATACAAGTTCTGGAAATAAATGATCTCCCCAAGCAAGGGGGTGGCCAACGAAATTCACATTTCAAACCTGGGAATCACAATAGGCAGTGGGCCAATGCACGAAGATAG 1146 0.4346 MTMKSESLDHWRNYFSTAKSYDIFDIIHHSIMVAASDFPKEFKLRRDGIAERLFSCMLTTKCLGCERVDHEDVDDGLALEAGSSEDVREEVLRIGNLLLNFKEESDSVLFESLRRLQLMELKVDLLEKTKIGKAVNPLRKHGSKDIRQLASTLIDCWKEMVDEWCKASTTTAIAASEGTPDSVNPSVLDEGVGLPSPPMDEGALFLAQIGSIELSQFFDGMDDYENPQQSGQFKSEASIKPSITAKDSKSQQPRKNEVAVRLNKPETVDNFPVRPPKSTMQRKSNMEPKMQPKIENNTIPKKPPMIQKDKSKFSDEEAAVQVKLEATKRKIQERYQRVENAKRQRTIQVLEINDLPKQGGGQRNSHFKPGNHNRQWANARR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi871g00009 381 MobiDBLite consensus disorder prediction 352 381 - -
Gabi871g00009 381 MobiDBLite consensus disorder prediction 358 381 - -
Gabi871g00009 381 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 369 IPR044805 -
Gabi871g00009 381 MobiDBLite consensus disorder prediction 222 249 - -
Gabi871g00009 381 CDD TFIIS_I 89 162 - -
Gabi871g00009 381 Coils Coil 321 344 - -
Gabi871g00009 381 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 169 IPR035441 -
Gabi871g00009 381 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 80 175 IPR035441 -
Gabi871g00009 381 MobiDBLite consensus disorder prediction 277 292 - -
Gabi871g00009 381 Pfam TFIIS helical bundle-like domain 113 161 IPR017923 -
Gabi871g00009 381 SMART TFS2_5 91 163 IPR003617 GO:0005634
Gabi871g00009 381 ProSiteProfiles TFIIS N-terminal domain profile. 89 164 IPR017923 -
Gabi871g00009 381 MobiDBLite consensus disorder prediction 222 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi871g00009 Gabi-Chr871 61217 63681 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi871g00009 Med26 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi871g00009 - - gmx:100775579 460.299