Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi870g00001 ATGAGTCGCAAGAGAGACAAACCCTACTTTTCCCGCCAAGCCGCCAAGCGCCGCCGCCCCCTGCCGGAACCCCCGGTGGAGGATATGCCCACGACGAGGCCTGCGCCGCCGTCCGCGGTGGTCGTCATGGGCCTCTCTCTAGACTGCTCCGTCTTAGATCTCAAGTCCCGATTCGAGATCTACGGCCCCATCTCCCGCATACGCATCGACGGTGATGCCGTCGGCTACGTCACCTACCGGAATAAGGACTCCGCCGACGCTGCCATCGCCGCCGGCCTCGACCCTCATTTCGGAATCACCGTTAACTCCAAAAAGGTTCAGGTGTTGTGGGCAACCGATCCTTTAGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAGGGTCAACGTCAAAGCTTGTGCGTGCTGAGGTACCATTGAGCAGGCATGGAAGAGGTCATAGACTCGCTTCAGCTATAGGGAATACCAAAAGAAGTGAGGATAGCTCAGGTAGCTCAGTTCTAGAAGTGCCTTTCAGGGGTAGAGAAATTGTTGCTTATGATGATATCTTAATTAATGTTAACAGAACCGAACAGAGAGCAGCGAAGGTAGTGATGGAAGAAGATGAACAATGGAAAAAATCAGAGAAGGAAGATGATAAGGATGAATCACAACAACAACGACTATGGAGTTGGGGTGCTGGAACCGAGGGGCAATTAGGAACCAACAAGCTTCAGGACGACCACTTCCCTCAACTCCTTCACCAACCCTCTCTCTCCTCCATCTCCTCCCTTGCATGCGGCGGCGCTCACGTCATCGCCTTGACCTCTGGTATCTACCCCATCTTTGTTTCTCACACTAAAAATATAAAATATCCTCATGGGAAAGTACTGTCATGGGGTAGGGGCAATTCTGGCCAACTAGGCCATGGGAAGGTTGTTAATAACGCCTTGTATCCCAAGACTGTAACATCATTGGACGGCTACATCATAACCCATGTCTCTGCTGGTTGGAGCCACTCTGGTTTTGTTTCAGATACTGGGTGCCTGTTCACTTGTGGGGATGGCTCGTTTGGTCAACTTGGGCATGGGGATTATGCCTCACATTGTTCCCCTATCAAAGTGTCATGCTTTGTTAATCAGCATGTTGCACAGGTTGCATGTGGCATGCGCCATTCCCTTGTCTTGTTAAAAGATTGTCCATTAAATCAAGTTTATGGATTTGGCTCCGGGAAGCGTGGTCAACTGGGTGTCTCCAAAGATAGGATCAAATCTATTAATCTTCCTAAAGTTGTTAGTGGTTTTGAAGATGTGGAAATAGTTGAAATTGCTGCAAATGGAGATCATAGTGCTGCAGTATCTGTGGATGGGCATCTTTACACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCACTTTCCTCAATGCTTAAACACTACATTGAATTTTACCAAAGCCACTCTGGGATGGAACCATGCTTTAGCTATGACTGGTGAGGGGGAGGTTTATATGGTTGGCGGCAACCACCTTGGAGTGCTTAGTGATCTTCAGAATATGAGCCCACCAAAGCAGTTAGCTGAGTTAAGAGAAGCCAGATTGGAGAAAGTCCCTGGCCTTGATGAGACGAAGATTGCTGATATTGCTACTGGAGCTGAGCATTCCGTTCTGGTCACAGAGAACGGAGAACTAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGCCTAGGGGATACTTGTGACCGAATCAGTCCTGTTACAGTAAATCTCGGTTGTGATCTGAATGAAGCTACATCAATCAGAGTTTACTGTGGAAGTGGGTTCACGTTTGCTTTATCCATGCCCTAG 1833 0.4883 MSRKRDKPYFSRQAAKRRRPLPEPPVEDMPTTRPAPPSAVVVMGLSLDCSVLDLKSRFEIYGPISRIRIDGDAVGYVTYRNKDSADAAIAAGLDPHFGITVNSKKVQVLWATDPLAMWREGVGNNKDKGSTSKLVRAEVPLSRHGRGHRLASAIGNTKRSEDSSGSSVLEVPFRGREIVAYDDILINVNRTEQRAAKVVMEEDEQWKKSEKEDDKDESQQQRLWSWGAGTEGQLGTNKLQDDHFPQLLHQPSLSSISSLACGGAHVIALTSGIYPIFVSHTKNIKYPHGKVLSWGRGNSGQLGHGKVVNNALYPKTVTSLDGYIITHVSAGWSHSGFVSDTGCLFTCGDGSFGQLGHGDYASHCSPIKVSCFVNQHVAQVACGMRHSLVLLKDCPLNQVYGFGSGKRGQLGVSKDRIKSINLPKVVSGFEDVEIVEIAANGDHSAAVSVDGHLYTWGRGFKGFEDAHFPQCLNTTLNFTKATLGWNHALAMTGEGEVYMVGGNHLGVLSDLQNMSPPKQLAELREARLEKVPGLDETKIADIATGAEHSVLVTENGELKTWGWGEHGQLGLGDTCDRISPVTVNLGCDLNEATSIRVYCGSGFTFALSMP 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi870g00001 610 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 542 552 IPR000408 -
Gabi870g00001 610 Pfam Regulator of chromosome condensation (RCC1) repeat 556 607 IPR000408 -
Gabi870g00001 610 Pfam Regulator of chromosome condensation (RCC1) repeat 222 269 IPR000408 -
Gabi870g00001 610 Pfam Regulator of chromosome condensation (RCC1) repeat 342 390 IPR000408 -
Gabi870g00001 610 Pfam Regulator of chromosome condensation (RCC1) repeat 398 447 IPR000408 -
Gabi870g00001 610 Pfam Regulator of chromosome condensation (RCC1) repeat 289 337 IPR000408 -
Gabi870g00001 610 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 555 IPR000408 -
Gabi870g00001 610 SUPERFAMILY RCC1/BLIP-II 289 608 IPR009091 -
Gabi870g00001 610 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 289 341 IPR000408 -
Gabi870g00001 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 90 IPR000504 GO:0003723
Gabi870g00001 610 SUPERFAMILY RNA-binding domain, RBD 30 119 IPR035979 GO:0003676
Gabi870g00001 610 Gene3D - 464 609 IPR009091 -
Gabi870g00001 610 Gene3D - 194 463 IPR009091 -
Gabi870g00001 610 CDD RRM_SF 40 108 - -
Gabi870g00001 610 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 610 IPR000408 -
Gabi870g00001 610 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 221 272 IPR000408 -
Gabi870g00001 610 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 380 390 IPR000408 -
Gabi870g00001 610 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 397 450 IPR000408 -
Gabi870g00001 610 Gene3D - 11 164 IPR012677 -
Gabi870g00001 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Gabi870g00001 610 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Gabi870g00001 610 PRINTS Chromosome condensation regulator RCC1 signature 256 269 IPR000408 -
Gabi870g00001 610 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Gabi870g00001 610 PRINTS Chromosome condensation regulator RCC1 signature 222 238 IPR000408 -
Gabi870g00001 610 PRINTS Chromosome condensation regulator RCC1 signature 484 502 IPR000408 -
Gabi870g00001 610 SMART rrm1_1 39 109 IPR000504 GO:0003723
Gabi870g00001 610 MobiDBLite consensus disorder prediction 199 222 - -
Gabi870g00001 610 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Gabi870g00001 610 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 221 335 - -
Gabi870g00001 610 MobiDBLite consensus disorder prediction 199 220 - -
Gabi870g00001 610 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi870g00001 Gabi-Chr870 42322 48824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi870g00001 1 185 Homeobox Transcription Factor Family AT1G27050 51.456 5.19e-52 176