Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi868g00002 ATGGGAATAGCAACACCCTCACTTCCTTCCATTCTCTCACATTCAAAGATACACCAACACCATTCATTTCCTATCTTTGACAAACAAGACTCTTCTAATTCCATGTCCCAAGATTATCACCAAGGAATCTTCACCTTCTCGAATGGATTCGAGAGATCCGCCACCGTAAATCACCAAGAACACCATTCCAAGCAGCCACAACAACAACCACCACCACCGTTAGTGGGTTTAGTAGAAGAGGAATCCGGTGGCCTCCCAGTGTACGAAACCGCAGGGATGTTATCGGAGATGTTCAATTTCACTCCCGGGGAAGCAGAATTGTTGGAGCAACAGCAACCAATGACGACGACGTTTCGATCCTCAACAAGAGTGGGCAGTGGCGAGTGGTACGGTAACAGACAAGGGATGTTAACAGTGTCGGGACCGTTGGGAGATTCGAAGAATCATCATCATCATCATCAGAGCAGTGTTCATAACCGTGACAGTAGTAGTACCAGCAGCATAGTTCACCACAACCACAACCACCATAATCATAATCATCATCAGATGTCAAGTATTAATGCAGACTCAGCAGCTGCAATGCAGCTTTTTCTCATGAACCCACAAACAAGGTCACCTTCACCATCTCATCATCATCATCATCACACAACCACAACTCCTCCTCCTCCTGCTACATCTTCCACCCTCCACATGTTACTCCCCAATCCTAATTCAACTACTTCCATGCAAGGCTTCGGTGGTGGATCCGGACCAGCAGGAGGGGCTTTTGGTCAATTCACATGGGTTCCTGACACTATTCATCAAGGAGGAGTCACAAACACAAACAACAACCCAGTTGAGATTGGAAGCGTTGTCGAAGGACAAGGTCTTTCGTTGTCCTTGTCGTCTTCTTTGCAACACTTGGAAGCTGCTAAAGCTGAGGAATTGAGGATGGGGGATAGTGGTTTTCTATATTACAATCAAGGAGGTGGTGGTGGAGGACCCTCTTACAAAAGTCTTGGGGGTCATCATCATCACCACCATCAAAACCAAGCATTGCATATACAAGGGGGAATAGGACTAGGTGTGGTGAACCACCATGGACATGTTGGGTTTGGTTCATCGTCATCATCATCATCATCCTTAGGTATGGTTAATGTGTTGAGGAATTCCAAGTATGTCAAGGCTGCTCAAGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGTCAGTTCAAGAAGAACAAGTTTAGTAGACAGCTCTCAAACCCTAATTCCAATCCCGGAGGTGGTAGTGGCGGTGGTGGTGCTTCTTCATCTTCGTCAAAGGATATTCCTCCTTTGTCAGCTGCTGACAGAATTGAACATCAGAGGAGGAAGGTCAAACTTCTAACCATGCTTGATGAGGTGGATAGGAAATACAGCCACTATTGCGAACAAATGCATATGGTGGTGAACTCATTTGATCTGGTGATGGGTTTTGGTGCTGCGGTTCCATACACTGCATTAGCTCAGAAAGCAATGTCTCGTCATTTTCGGTGTCTAAAGGATGCAATATCAGCGCAACTGAAGCAAACTTGTGAGGTGCTGGGTGAAAAAGATGGGGTGGGAACTTCAGGTTTGACCAAAGGAGAGACCCCAAGGCTTAAGATGCTTGAACAAAGCCTAAGACAGCAAAGAGCCTTCCACCAGATGGGGATGATGGAGCAAGAAGCATGGAGACCCCAGAGAGGATTGCCTGAACGCTCTGTCAACATTTTGAGAGCCTGGCTTTTTGAGCATTTTCTTCACCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGCCTATCGAGAAATCAGGTATCAAACTGGTTCATAAATGCCAGGGTTCGTTTGTGGAAACCCATGGTGGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAGGGAGGAGCAGAAGAGAGAGAAAGGAACCAAAGCAAAAGCAGTAGCAGCAACAACAGTAGTGGCCACCTAGCACAAACTCCAACACCCTCAACCACAGCATCAACAGCAACAGCGCCACCACCACCACCCCCAACAACAACAACGACGACACAAACAACAGCACCAACAGGCAAAAGATCCGATATCAATGCAAACGAAAGCGACCCTTCACTCGCAGCATTTAATAGACAAGGCTTCTCGGAAAACAAAGCAAAGCAATCCCCCTCTACCACCGTCACCAACACCATTATGGCTCCTAACACCGCCACCAGAGCCACCGCCTCTGAGGTGGCGCCACCTGTGCCCCAGGGTTTCGACTCTGACGATTCGTGTCGGCATGGAACATTGGTTACAGCAGAATATGGGACCACCGCTTCTGCTACTTCTGACATTGGTGCTACTCTCATTAGGTTTGGGACCACCGCCGGTGACGTGTCACTCACCTTAGGGTTACGCCACGCCGGGAACATCCCTGAGAAAACAACTTTCTCTGTTAGGGACTTTGGGGGCATTTAA 2475 0.4768 MGIATPSLPSILSHSKIHQHHSFPIFDKQDSSNSMSQDYHQGIFTFSNGFERSATVNHQEHHSKQPQQQPPPPLVGLVEEESGGLPVYETAGMLSEMFNFTPGEAELLEQQQPMTTTFRSSTRVGSGEWYGNRQGMLTVSGPLGDSKNHHHHHQSSVHNRDSSSTSSIVHHNHNHHNHNHHQMSSINADSAAAMQLFLMNPQTRSPSPSHHHHHHTTTTPPPPATSSTLHMLLPNPNSTTSMQGFGGGSGPAGGAFGQFTWVPDTIHQGGVTNTNNNPVEIGSVVEGQGLSLSLSSSLQHLEAAKAEELRMGDSGFLYYNQGGGGGGPSYKSLGGHHHHHHQNQALHIQGGIGLGVVNHHGHVGFGSSSSSSSSLGMVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQLSNPNSNPGGGSGGGGASSSSSKDIPPLSAADRIEHQRRKVKLLTMLDEVDRKYSHYCEQMHMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKQTCEVLGEKDGVGTSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGGAEERERNQSKSSSSNNSSGHLAQTPTPSTTASTATAPPPPPPTTTTTTQTTAPTGKRSDINANESDPSLAAFNRQGFSENKAKQSPSTTVTNTIMAPNTATRATASEVAPPVPQGFDSDDSCRHGTLVTAEYGTTASATSDIGATLIRFGTTAGDVSLTLGLRHAGNIPEKTTFSVRDFGGI 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi868g00002 824 ProSiteProfiles 'Homeobox' domain profile. 563 626 IPR001356 GO:0003677
Gabi868g00002 824 MobiDBLite consensus disorder prediction 689 708 - -
Gabi868g00002 824 MobiDBLite consensus disorder prediction 652 673 - -
Gabi868g00002 824 Gene3D - 569 631 - -
Gabi868g00002 824 SUPERFAMILY Homeodomain-like 568 633 IPR009057 -
Gabi868g00002 824 MobiDBLite consensus disorder prediction 674 688 - -
Gabi868g00002 824 MobiDBLite consensus disorder prediction 55 79 - -
Gabi868g00002 824 SMART HOX_1 566 630 IPR001356 GO:0003677
Gabi868g00002 824 MobiDBLite consensus disorder prediction 115 184 - -
Gabi868g00002 824 MobiDBLite consensus disorder prediction 411 439 - -
Gabi868g00002 824 SMART prehox3 375 514 IPR006563 -
Gabi868g00002 824 Pfam Homeobox KN domain 583 622 IPR008422 GO:0003677|GO:0006355
Gabi868g00002 824 FunFam BEL1-like homeodomain protein 4 569 631 - -
Gabi868g00002 824 MobiDBLite consensus disorder prediction 636 651 - -
Gabi868g00002 824 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 206 656 - -
Gabi868g00002 824 MobiDBLite consensus disorder prediction 201 230 - -
Gabi868g00002 824 CDD homeodomain 566 627 IPR001356 GO:0003677
Gabi868g00002 824 MobiDBLite consensus disorder prediction 411 445 - -
Gabi868g00002 824 MobiDBLite consensus disorder prediction 636 708 - -
Gabi868g00002 824 Pfam Associated with HOX 380 513 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi868g00002 Gabi-Chr868 43542 52294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi868g00002 776 824 Homeobox Transcription Factor Family AT2G23760 55.932 4.43e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi868g00002 POX 1.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi868g00002 - - gmx:100807143 899.042