Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi862g00004 ATGGCAGTGGCACTCTCAATCCGACACCGTTTGGCTTCACGCTTCATAACACCATTTCATCACTTCACATTCTCATTCTCCTTCACCACCGCCACCACCACCTCACCACCGCAACACCACCATCGCACAACTCCGCCGCCAATCCGAGTTGCCCTCACCGACTCAGTCGGCCGCGCCGTGTTCGCCACTCGGCCGATCGCTGCCGGAGATCTCATCCACACCGCCAAACCCGCCTTGTGCCACCCTTCTCCCTCCGCTGTCCACACCGTCTGCTACTCCTGCCTCGCTAAGCTCGCGAATCGCACCAACTCCGAACCTCAACGCGTGTCGTTTTGCAGCCAAGATTGCGAACGACGCTGCAAGGAATATTACGATTTCGAGATGAAAGCAAATTGGACGGCTTTTGATGACTATTGCCGGACCCATGGTTTGAAATATCCCTTTCTCGTAAAGCGGTTGGCTTGCATGGTCGTATCGGGAGTTGCTAGAAGTGACAGTCTTGACATACTTCAGCCTGCCAATTTGACACCTGAGATGATTTTAGAGATGGAAGAGGAATTTGCCTTACTAAGGAATGCCTTCACAAAGACTCTGATTGCAGATGAACATATTGCTTTTTTAACCAGGCAATGGTACATTAGCGTTTTGGCACGAATTCGAATCAATGCATTTCGTATTGAGTTGGCTGGAGGACTATATGAAGATCTTCTTTCATCAGCAGTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTGTATATACTTCCATCCTTCTACAATCATGATTGTGATCCTAATGCACACATTATATGGATAGATAATGCCGATGCAAAATTGAAGGCCCTCCGTGACATTGAAGAAGGCGAAGAACTCAGAATCTGCTATATTGATGCCAGCCTGGACCGTGATGCTCGGCAAGAACTATTATTTGGAGGTTTTGGTTTTCAATGCAATTGTAGTAGGTGCTTACATGGCGATTAA 987 0.4813 MAVALSIRHRLASRFITPFHHFTFSFSFTTATTTSPPQHHHRTTPPPIRVALTDSVGRAVFATRPIAAGDLIHTAKPALCHPSPSAVHTVCYSCLAKLANRTNSEPQRVSFCSQDCERRCKEYYDFEMKANWTAFDDYCRTHGLKYPFLVKRLACMVVSGVARSDSLDILQPANLTPEMILEMEEEFALLRNAFTKTLIADEHIAFLTRQWYISVLARIRINAFRIELAGGLYEDLLSSAVASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNADAKLKALRDIEEGEELRICYIDASLDRDARQELLFGGFGFQCNCSRCLHGD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi862g00004 328 CDD SET_SMYD 251 324 - -
Gabi862g00004 328 Pfam SET domain 57 297 IPR001214 GO:0005515
Gabi862g00004 328 Gene3D - 142 223 - -
Gabi862g00004 328 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 44 326 - -
Gabi862g00004 328 SUPERFAMILY SET domain 42 324 IPR046341 -
Gabi862g00004 328 ProSiteProfiles SET domain profile. 46 298 IPR001214 GO:0005515
Gabi862g00004 328 Gene3D SET domain 59 324 IPR046341 -
Gabi862g00004 328 Gene3D - 90 141 - -
Gabi862g00004 328 SMART set_7 46 304 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi862g00004 Gabi-Chr862 68778 72932 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi862g00004 SET 4.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi862g00004 - - gmx:100801270 469.159