Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi862g00002 ATGGGCGTCAATTCCTTGCCATCGGAGGAATCCACCCTCGATCTTGACGAGCAGATCTCACAGCTCATGCAGTGCAAGCCACTCTCTGAGCAACAGGTTAGAGTTTTATGTGACAAGGCTAAGGAGATTTTAATGGACGAAAGCAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACACTTCTTGTGGCACTGAAAGTACGGTATTCTCAGCGAATTACTATTCTCAGGGGAAACCATGAAAGCCGTCAGATCACTCAAGTATATGGATTTTACGATGAATGCTTAAGAAAGTATGGTAATGCTAATGTTTGGAAGATCTTTACAGACCTTTTTGATTTCTTTCCATTGACTGCATTGGTTGAATCCGAAATATTTTGTTTGCATGGTGGACTATCACCTTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTGTTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGGGGTGCAGGGTATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACAAACAAGCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAGAAGGTGGTTACCATTTTTAGTGCTCCTAACTACTGTTATCGATGTGGGAACATGGCTTCCATTTTGGAGGTTGATGATTCCAAGGGCCACACATTTATCCAGTTTGAACCTGCTCCCAGGAGAGGAGAACCTGACGTCACCCGGAGAACACCTGATTACTTCTTATGA 945 0.4317 MGVNSLPSEESTLDLDEQISQLMQCKPLSEQQVRVLCDKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYSQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNKLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFEPAPRRGEPDVTRRTPDYFL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi862g00002 314 SMART pp2a_7 28 298 IPR006186 GO:0016787
Gabi862g00002 314 FunFam Serine/threonine-protein phosphatase 8 314 - -
Gabi862g00002 314 SUPERFAMILY Metallo-dependent phosphatases 8 299 IPR029052 -
Gabi862g00002 314 CDD MPP_PP2A_PP4_PP6 14 298 - -
Gabi862g00002 314 Pfam Calcineurin-like phosphoesterase 56 247 IPR004843 GO:0016787
Gabi862g00002 314 ProSitePatterns Serine/threonine specific protein phosphatases signature. 119 124 IPR006186 GO:0016787
Gabi862g00002 314 PRINTS Serine/threonine phosphatase family signature 153 179 IPR006186 GO:0016787
Gabi862g00002 314 PRINTS Serine/threonine phosphatase family signature 56 83 IPR006186 GO:0016787
Gabi862g00002 314 PRINTS Serine/threonine phosphatase family signature 182 209 IPR006186 GO:0016787
Gabi862g00002 314 PRINTS Serine/threonine phosphatase family signature 238 258 IPR006186 GO:0016787
Gabi862g00002 314 PRINTS Serine/threonine phosphatase family signature 260 276 IPR006186 GO:0016787
Gabi862g00002 314 PRINTS Serine/threonine phosphatase family signature 118 142 IPR006186 GO:0016787
Gabi862g00002 314 PRINTS Serine/threonine phosphatase family signature 85 112 IPR006186 GO:0016787
Gabi862g00002 314 Gene3D - 7 314 IPR029052 -
Gabi862g00002 314 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 14 314 IPR047129 GO:0004722
Gabi862g00002 314 MobiDBLite consensus disorder prediction 295 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi862g00002 Gabi-Chr862 39723 50406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi862g00002 20 244 Calmodulin-binding Proteins AT5G63870 34.082 6.20e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi862g00002 K04382 - gmx:100801108 638.647