Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi861g00005 ATGCAGGTTGAGGTGAGCAAGCACACAGAAGGTGTGAATGAAAAGGCGTTACGACCAAATGGATTGCCTAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGATAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGATCCAAAATCTATTATTCGGGCTATGAATGATGATACTGCCACCAAGCATGCAGAGCAAGAGAAATTCAATATTGATTTTGCTTTGCCAAAGTCTGTCGAAATTGGGAATACGAGTGCACCTGGAAGACAAACTTCACTGAACTTCCAAGATGATATATCGGATTTGAGTTCTTGCCAGGATAGGAGCAAGTCATCAAGAAAATCAGGACGGATTTCTTTCAAAAGTTTTAAAGGAAGATCTCTAAGTTCTGTAGGGAGAGACGAAGAGAAGCCCATTGTTGAACCCGAGATTTTGATGACCAAGGAAATAGAGTGGTTCAACAGTTGGGAGTGTTCTGAAAGAGAGAGGGATATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAATTTTGTGATTTCGGATCCTAGACTTCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACAGAGTATACGCGAGAAGAAATTTTGGGACGTAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGTCAACTGTCGCGAAGATTAGAGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAACCAATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGATCATGTAGAACCCTTGAAAAACCGCCTGTCTGAGAGAGCTGAGCAGCAAAGTGCTAAGTTGGTGAAAGCCACGGCAGAAAATGTTAATGAAGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGATGATTTGTGGGCAATTCATTCTCAACCTGTCTTTCCACGACCTCACAAAAAGGACAATCCCTCTTGGGTAGCAATTCAAAAGATAGCTGCAAGTGGTGATAAGATGGGCCTGCATCATTTTTTGCCCATAAGACCATTGGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCCAAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAATCTGTAATGTTAAATCGTAATAAGGTTCACCGAGCATGCATTGAAAGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAACACTATATACCTCATTTCAGACTTCTACACATGTGTGTTTGATTACTGACTTTTGCTCCGGCGGAGAGATGTTTGCATTGCTTGACAAGCAACCCATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCTGCAGAGGTTGTCATTTGTTTGGAATATCTCCACTGTTTAGGCATAATTTATCGGGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGCCATGTTGTATTAACTGATTTTGACCTCTCATTTATGACATATTGTAAACCCCAGGTTGTGAAGCACTCAGTACCTACTAATAGAAGAAGATCACGAAGTCAACCACCACCGATATTTGTTGCAGAGCCGGTTACACAATCAAACTCTTTTGTTGGAACTGAAGAATACATTGCCCCTGAAATTATAACCGGAGCTGGGCATACTAGTGCTATAGATTGGTGGACCCTCGGTATCTTGTTGTATGAGATGCTCTACGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCTAGGCAATTGATTAATGCACTATTGCAAAGAGACCCTGCCAGTCGTCTAGGTTCAATTACTGGTGCCAATGAAATCAAACAACATCCCTTTTTCCGCGGAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCATTAGATGTTCCTCTTCAATTGATAGGAAAAGATTCAATGGCAAAGGATTTGAAGTGGGAAGATGATGGGGTGCTCGTTAGCTCGATTGATATGGATATTTTTTGA 2124 0.4124 MQVEVSKHTEGVNEKALRPNGLPKSLIRYDARQKEIALGSITEVVQTVKDPKSIIRAMNDDTATKHAEQEKFNIDFALPKSVEIGNTSAPGRQTSLNFQDDISDLSSCQDRSKSSRKSGRISFKSFKGRSLSSVGRDEEKPIVEPEILMTKEIEWFNSWECSERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQSTVAKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSERAEQQSAKLVKATAENVNEAVRELPDANLRPDDLWAIHSQPVFPRPHKKDNPSWVAIQKIAASGDKMGLHHFLPIRPLGCGDTGSVHLVELQGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCSGGEMFALLDKQPMKIFKEESARFYAAEVVICLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTYCKPQVVKHSVPTNRRRSRSQPPPIFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPASRLGSITGANEIKQHPFFRGINWPLIRNMSPPPLDVPLQLIGKDSMAKDLKWEDDGVLVSSIDMDIF 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi861g00005 707 SMART pac_2 247 289 IPR001610 -
Gabi861g00005 707 Pfam Protein kinase domain 374 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00005 707 SUPERFAMILY PYP-like sensor domain (PAS domain) 189 285 IPR035965 -
Gabi861g00005 707 Gene3D PAS domain 159 323 - -
Gabi861g00005 707 ProSiteProfiles PAS repeat profile. 170 243 IPR000014 -
Gabi861g00005 707 Coils Coil 294 314 - -
Gabi861g00005 707 Gene3D Transferase(Phosphotransferase) domain 1 455 672 - -
Gabi861g00005 707 ProSitePatterns Protein kinases ATP-binding region signature. 377 400 IPR017441 GO:0005524
Gabi861g00005 707 Gene3D Phosphorylase Kinase; domain 1 370 454 - -
Gabi861g00005 707 FunFam LOV domain-containing protein 370 454 - -
Gabi861g00005 707 FunFam LOV domain-containing protein 159 323 - -
Gabi861g00005 707 FunFam Putative LOV domain-containing protein 455 670 - -
Gabi861g00005 707 PANTHER FLIPPASE KINASE 1-RELATED 207 674 - -
Gabi861g00005 707 CDD PAS 193 285 IPR000014 -
Gabi861g00005 707 CDD STKc_phototropin_like 369 681 - -
Gabi861g00005 707 SMART serkin_6 371 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00005 707 Pfam PAS domain 193 285 IPR000014 -
Gabi861g00005 707 SUPERFAMILY Protein kinase-like (PK-like) 352 686 IPR011009 -
Gabi861g00005 707 ProSiteProfiles PAC domain profile. 244 298 IPR000700 -
Gabi861g00005 707 ProSiteProfiles Protein kinase domain profile. 371 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00005 707 NCBIfam PAS domain S-box protein 196 287 IPR000014 -
Gabi861g00005 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi861g00005 Gabi-Chr861 29212 84060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi861g00005 1 706 AGC Kinase Gene Family AT5G58140 76.338 0.0 1087
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi861g00005 Pkinase 4.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi861g00005 K20715 - gmx:100820096 1228.77