Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi861g00004 ATGGAGAAACAAGAATTATCTGCTACTTATGATCCTGATGCCAGCAGTGATCAGCCAGGTTCATTTCAGATATTCAAATTGCCAGATAACAGTAAAAGTGAGGAGGATTATAGAAAAGCCGTAAAACTTGATGGAGGTGCGGTAATCGCTCCCTCTAATTCTGCAGGTGGTAGGGAATCTGTCAACAGATGGATGGCATTTGCTGGGAAGTCTAAATTCACAATTGATGGCAACTCTACTAAAAGGGATCTTTGTGGGGATAAAATTATAATGAAAGACAATGACTTGATGGATGAAGCAACCATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGATGAACTCTGGTAATTTCAAAGCAACAGGAGTAGTAGATAGAAGTTCCTCTGACAGAAGCAAAAACTTATCAGATAGACTTGTTGAATCAACAAGGACTTCTGGGGAATCAAATTATGGATCCGAGTCATCATCAGGGGTGTTCCCAAGGGTCTCACAAGAGTTGAAGGAAGCATTGGCGACGCTGCGACAGACATTTGTTGTCTCAGATGCAACCAAACCAGACTGCCCAATCATCTATGCTAGCAGTGGCTTTTTTACTATGACTGGTTATTCTTTAAAGGAAGTTATTGGAAGGAATTGCCGATTTCTTCAGGGGCCAGATACTGACAAGAATGAAGTTGCAAAAATTCGGGATGCAACTAGAAATGGGAGAAGTTATTGTGGCAGGCTTTTAAATTACAAGAAAGATGGAACTCCGTTCTGGAATCTACTCACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGCACACAGAAGGTGTGAATGAAAAGGCGTTACGACCAAATGGATTGCCTAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGATAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGATCCAAAATCTATTATTCGGGCTATGAATGATGATACTGCCACCAAGCATGCAGAGCAAGAGAAATTCAATATTGATTTTGCTTTGCCAAAGTCTGTCGAAATTGGGAATACGAGTGCACCTGGAAGACAAACTTCACTGAACTTCCAAGATGATATATCGGATTTGAGTTCTTGCCAGGATAGGAGCAAGTCATCAAGAAAATCAGGACGGATTTCTTTCAAAAGTTTTAAAGGAAGATCTCTAAGTTCTGTAGGGAGAGACGAAGAGAAGCCCATTGTTGAACCCGAGATTTTGATGACCAAGGAAATAGAGTGGTTCAACAGTTGGGAGTGTTCTGAAAGAGAGAGGGATATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAATTTTGTGATTTCGGATCCTAGACTTCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACAGAGTATACGCGAGAAGAAATTTTGGGACGTAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGTCAACTGTCGCGAAGATTAGAGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAACCAATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGATCATGTAGAACCCTTGAAAAACCGCCTGTCTGAGAGAGCTGAGCAGCAAAGTGCTAAGTTGGTGAAAGCCACGGCAGAAAATGTTAATGAAGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGATGATTTGTGGGCAATTCATTCTCAACCTGTCTTTCCACGACCTCACAAAAAGGACAATCCCTCTTGGGTAGCAATTCAAAAGATAGCTGCAAGTGGTGATAAGATGGGCCTGCATCATTTTTTGCCCATAAGACCATTGGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCCAAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAATCTGTAATGTTAAATCGTAATAAGGTTCACCGAGCATGCATTGAAAGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAACACTATATACCTCATTTCAGACTTCTACACATGTGTGTTTGATTACTGACTTTTGCTCCGGCGGAGAGATGTTTGCATTGCTTGACAAGCAACCCATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCTGCAGAGGTTGTCATTTGTTTGGAATATCTCCACTGTTTAGGCATAATTTATCGGGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGCCATGTTGTATTAACTGATTTTGACCTCTCATTTATGACATATTGTAAACCCCAGGTTGTGAAGCACTCAGTACCTACTAATAGAAGAAGATCACGAAGTCAACCACCACCGATATTTGTTGCAGAGCCGGTTACACAATCAAACTCTTTTGTTGGAACTGAAGAATACATTGCCCCTGAAATTATAACCGGAGCTGGGCATACTAGTGCTATAGATTGGTGGACCCTCGGTATCTTGTTGTATGAGATGCTCTACGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGTAAACAAAAAAAATGATGGATATTACTAG 2718 0.4099 MEKQELSATYDPDASSDQPGSFQIFKLPDNSKSEEDYRKAVKLDGGAVIAPSNSAGGRESVNRWMAFAGKSKFTIDGNSTKRDLCGDKIIMKDNDLMDEATIAERTAEWGLVMNSGNFKATGVVDRSSSDRSKNLSDRLVESTRTSGESNYGSESSSGVFPRVSQELKEALATLRQTFVVSDATKPDCPIIYASSGFFTMTGYSLKEVIGRNCRFLQGPDTDKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKHTEGVNEKALRPNGLPKSLIRYDARQKEIALGSITEVVQTVKDPKSIIRAMNDDTATKHAEQEKFNIDFALPKSVEIGNTSAPGRQTSLNFQDDISDLSSCQDRSKSSRKSGRISFKSFKGRSLSSVGRDEEKPIVEPEILMTKEIEWFNSWECSERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQSTVAKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSERAEQQSAKLVKATAENVNEAVRELPDANLRPDDLWAIHSQPVFPRPHKKDNPSWVAIQKIAASGDKMGLHHFLPIRPLGCGDTGSVHLVELQGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCSGGEMFALLDKQPMKIFKEESARFYAAEVVICLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTYCKPQVVKHSVPTNRRRSRSQPPPIFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPVNKKNDGYY 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi861g00004 905 SMART pac_2 240 282 IPR001610 -
Gabi861g00004 905 SMART pac_2 521 563 IPR001610 -
Gabi861g00004 905 FunFam Putative LOV domain-containing protein 177 333 - -
Gabi861g00004 905 ProSiteProfiles PAC domain profile. 518 572 IPR000700 -
Gabi861g00004 905 MobiDBLite consensus disorder prediction 1 33 - -
Gabi861g00004 905 Gene3D PAS domain 433 597 - -
Gabi861g00004 905 ProSiteProfiles PAS repeat profile. 444 517 IPR000014 -
Gabi861g00004 905 MobiDBLite consensus disorder prediction 139 158 - -
Gabi861g00004 905 CDD STKc_phototropin_like 643 897 - -
Gabi861g00004 905 ProSiteProfiles Protein kinase domain profile. 645 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00004 905 Coils Coil 568 588 - -
Gabi861g00004 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Gabi861g00004 905 SUPERFAMILY PYP-like sensor domain (PAS domain) 463 559 IPR035965 -
Gabi861g00004 905 SUPERFAMILY Protein kinase-like (PK-like) 626 897 IPR011009 -
Gabi861g00004 905 CDD PAS 467 559 IPR000014 -
Gabi861g00004 905 ProSiteProfiles PAS repeat profile. 163 236 IPR000014 -
Gabi861g00004 905 FunFam LOV domain-containing protein 644 728 - -
Gabi861g00004 905 Pfam Protein kinase domain 648 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00004 905 NCBIfam PAS domain S-box protein 470 561 IPR000014 -
Gabi861g00004 905 NCBIfam PAS domain S-box protein 189 283 IPR000014 -
Gabi861g00004 905 PANTHER FLIPPASE KINASE 1-RELATED 143 895 - -
Gabi861g00004 905 MobiDBLite consensus disorder prediction 9 28 - -
Gabi861g00004 905 MobiDBLite consensus disorder prediction 122 158 - -
Gabi861g00004 905 SUPERFAMILY PYP-like sensor domain (PAS domain) 184 276 IPR035965 -
Gabi861g00004 905 FunFam Probable serine/threonine-protein kinase cot-1 728 903 - -
Gabi861g00004 905 FunFam LOV domain-containing protein 433 597 - -
Gabi861g00004 905 ProSitePatterns Protein kinases ATP-binding region signature. 651 674 IPR017441 GO:0005524
Gabi861g00004 905 CDD PAS 190 279 IPR000014 -
Gabi861g00004 905 SMART serkin_6 645 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00004 905 Gene3D Phosphorylase Kinase; domain 1 644 728 - -
Gabi861g00004 905 SMART pas_2 165 234 IPR000014 -
Gabi861g00004 905 SMART pas_2 446 515 IPR000014 -
Gabi861g00004 905 Gene3D PAS domain 177 347 - -
Gabi861g00004 905 Gene3D Transferase(Phosphotransferase) domain 1 729 898 - -
Gabi861g00004 905 Pfam PAS domain 467 559 IPR000014 -
Gabi861g00004 905 Pfam PAS domain 184 280 IPR000014 -
Gabi861g00004 905 ProSiteProfiles PAC domain profile. 237 291 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi861g00004 Gabi-Chr861 27729 83467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi861g00004 95 898 AGC Kinase Gene Family AT5G58140 74.568 0.0 1196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi861g00004 Pkinase 1.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi861g00004 K20715 - gmx:100804783 1465.29