Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi861g00003 ATGGAGAAACAAGAATTATCTGCTACTTATGATCCTGATGCCAGCAGTGATCAGCCAGGTTCATTTCAGATATTCAAATTGCCAGATAACAGTAAAAGTGAGGAGGATTATAGAAAAGCCGTAAAACTTGATGGAGGTGCGGTAATCGCTCCCTCTAATTCTGCAGGTGGTAGGGAATCTGTCAACAGATGGATGGCATTTGCTGGGAAGTCTAAATTCACAATTGATGGCAACTCTACTAAAAGGGATCTTTGTGGGGATAAAATTATAATGAAAGACAATGACTTGATGGATGAAGCAACCATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGATGAACTCTGGTAATTTCAAAGCAACAGGAGTAGTAGATAGAAGTTCCTCTGACAGAAGCAAAAACTTATCAGATAGACTTGTTGAATCAACAAGGACTTCTGGGGAATCAAATTATGGATCCGAGTCATCATCAGGGGTGTTCCCAAGGGTCTCACAAGAGTTGAAGGAAGCATTGGCGACGCTGCGACAGACATTTGTTGTCTCAGATGCAACCAAACCAGACTGCCCAATCATCTATGCTAGCAGTGGCTTTTTTACTATGACTGGTTATTCTTTAAAGGAAGTTATTGGAAGGAATTGCCGATTTCTTCAGGGGCCAGATACTGACAAGAATGAAGTTGCAAAAATTCGGGATGCAACTAGAAATGGGAGAAGTTATTGTGGCAGGCTTTTAAATTACAAGAAAGATGGAACTCCGTTCTGGAATCTACTCACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGCACACAGAAGGTGTGAATGAAAAGGCGTTACGACCAAATGGATTGCCTAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGATAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGATCCAAAATCTATTATTCGGGCTATGAATGATGATACTGCCACCAAGCATGCAGAGCAAGAGAAATTCAATATTGATTTTGCTTTGCCAAAGTCTGTCGAAATTGGGAATACGAGTGCACCTGGAAGACAAACTTCACTGAACTTCCAAGATGATATATCGGATTTGAGTTCTTGCCAGGATAGGAGCAAGTCATCAAGAAAATCAGGACGGATTTCTTTCAAAAGTTTTAAAGGAAGATCTCTAAGTTCTGTAGGGAGAGACGAAGAGAAGCCCATTGTTGAACCCGAGATTTTGATGACCAAGGAAATAGAGTGGTTCAACAGTTGGGAGTGTTCTGAAAGAGAGAGGGATATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAATTTTGTGATTTCGGATCCTAGACTTCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACAGAGTATACGCGAGAAGAAATTTTGGGACGTAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGTCAACTGTCGCGAAGATTAGAGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAACCAATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGATCATGTAGAACCCTTGAAAAACCGCCTGTCTGAGAGAGCTGAGCAGCAAAGTGCTAAGTTGGTGAAAGCCACGGCAGAAAATGTTAATGAAGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGATGATTTGTGGGCAATTCATTCTCAACCTGTCTTTCCACGACCTCACAAAAAGGACAATCCCTCTTGGGTAGCAATTCAAAAGATAGCTGCAAGTGGTGATAAGATGGGCCTGCATCATTTTTTGCCCATAAGACCATTGGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCCAAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAATCTGTAATGTTAAATCGTAATAAGGTTCACCGAGCATGCATTGAAAGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAACACTATATACCTCATTTCAGACTTCTACACATGTGTGTTTGATTACTGACTTTTGCTCCGGCGGAGAGATGTTTGCATTGCTTGACAAGCAACCCATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCTGCAGAGGTTGTCATTTGTTTGGAATATCTCCACTGTTTAGGCATAATTTATCGGGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGCCATGTTGTATTAACTGATTTTGACCTCTCATTTATGACATATTGTAAACCCCAGGTTGTGAAGCACTCAGTACCTACTAATAGAAGAAGATCACGAAGTCAACCACCACCGATATTTGTTGCAGAGCCGGTTACACAATCAAACTCTTTTGTTGGAACTGAAGAATACATTGCCCCTGAAATTATAACCGGAGCTGGGCATACTAGTGCTATAGATTGGTGGACCCTCGGTATCTTGTTGTATGAGATGCTCTACGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCTAGGCAATTGATTAATGCACTATTGCAAAGAGACCCTGCCAGTCGTCTAGGTTCAATTACTGGTGCCAATGAAATCAAACAACATCCCTTTTTCCGCGGAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCATTAGATGTTCCTCTTCAATTGATAGGAAAAGATTCAATGGCAAAGGATTTGAAGTGGGAAGATGATGGGGTGCTCGTTAGCTCGATTGATATGGATATTTTTTGA 2946 0.4128 MEKQELSATYDPDASSDQPGSFQIFKLPDNSKSEEDYRKAVKLDGGAVIAPSNSAGGRESVNRWMAFAGKSKFTIDGNSTKRDLCGDKIIMKDNDLMDEATIAERTAEWGLVMNSGNFKATGVVDRSSSDRSKNLSDRLVESTRTSGESNYGSESSSGVFPRVSQELKEALATLRQTFVVSDATKPDCPIIYASSGFFTMTGYSLKEVIGRNCRFLQGPDTDKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKHTEGVNEKALRPNGLPKSLIRYDARQKEIALGSITEVVQTVKDPKSIIRAMNDDTATKHAEQEKFNIDFALPKSVEIGNTSAPGRQTSLNFQDDISDLSSCQDRSKSSRKSGRISFKSFKGRSLSSVGRDEEKPIVEPEILMTKEIEWFNSWECSERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQSTVAKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSERAEQQSAKLVKATAENVNEAVRELPDANLRPDDLWAIHSQPVFPRPHKKDNPSWVAIQKIAASGDKMGLHHFLPIRPLGCGDTGSVHLVELQGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCSGGEMFALLDKQPMKIFKEESARFYAAEVVICLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTYCKPQVVKHSVPTNRRRSRSQPPPIFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPASRLGSITGANEIKQHPFFRGINWPLIRNMSPPPLDVPLQLIGKDSMAKDLKWEDDGVLVSSIDMDIF 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi861g00003 981 FunFam Putative LOV domain-containing protein 177 333 - -
Gabi861g00003 981 SMART pac_2 240 282 IPR001610 -
Gabi861g00003 981 SMART pac_2 521 563 IPR001610 -
Gabi861g00003 981 CDD STKc_phototropin_like 643 955 - -
Gabi861g00003 981 SUPERFAMILY PYP-like sensor domain (PAS domain) 184 276 IPR035965 -
Gabi861g00003 981 ProSiteProfiles PAC domain profile. 518 572 IPR000700 -
Gabi861g00003 981 MobiDBLite consensus disorder prediction 1 33 - -
Gabi861g00003 981 SUPERFAMILY Protein kinase-like (PK-like) 626 960 IPR011009 -
Gabi861g00003 981 ProSiteProfiles PAS repeat profile. 444 517 IPR000014 -
Gabi861g00003 981 ProSiteProfiles Protein kinase domain profile. 645 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00003 981 MobiDBLite consensus disorder prediction 139 158 - -
Gabi861g00003 981 SMART serkin_6 645 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00003 981 Coils Coil 568 588 - -
Gabi861g00003 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Gabi861g00003 981 SUPERFAMILY PYP-like sensor domain (PAS domain) 463 559 IPR035965 -
Gabi861g00003 981 Pfam PAS domain 467 559 IPR000014 -
Gabi861g00003 981 Pfam PAS domain 184 280 IPR000014 -
Gabi861g00003 981 FunFam Putative LOV domain-containing protein 729 944 - -
Gabi861g00003 981 CDD PAS 467 559 IPR000014 -
Gabi861g00003 981 ProSiteProfiles PAS repeat profile. 163 236 IPR000014 -
Gabi861g00003 981 Gene3D PAS domain 433 597 - -
Gabi861g00003 981 Gene3D PAS domain 177 346 - -
Gabi861g00003 981 MobiDBLite consensus disorder prediction 9 28 - -
Gabi861g00003 981 MobiDBLite consensus disorder prediction 122 158 - -
Gabi861g00003 981 FunFam LOV domain-containing protein 433 597 - -
Gabi861g00003 981 ProSitePatterns Protein kinases ATP-binding region signature. 651 674 IPR017441 GO:0005524
Gabi861g00003 981 CDD PAS 190 279 IPR000014 -
Gabi861g00003 981 Gene3D Phosphorylase Kinase; domain 1 644 728 - -
Gabi861g00003 981 SMART pas_2 165 234 IPR000014 -
Gabi861g00003 981 SMART pas_2 446 515 IPR000014 -
Gabi861g00003 981 FunFam LOV domain-containing protein 644 728 - -
Gabi861g00003 981 NCBIfam PAS domain S-box protein 189 283 IPR000014 -
Gabi861g00003 981 NCBIfam PAS domain S-box protein 470 561 IPR000014 -
Gabi861g00003 981 Gene3D Transferase(Phosphotransferase) domain 1 729 947 - -
Gabi861g00003 981 Pfam Protein kinase domain 648 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00003 981 PANTHER FLIPPASE KINASE 1-RELATED 143 948 - -
Gabi861g00003 981 ProSiteProfiles PAC domain profile. 237 291 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi861g00003 Gabi-Chr861 27575 84063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi861g00003 95 980 AGC Kinase Gene Family AT5G58140 74.776 0.0 1326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi861g00003 Pkinase 9.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi861g00003 K20715 - gmx:100804783 1620.52