Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi861g00002 ATGGAGAAACAAGAATTATCTGCTACTTATGATCCTGATGCCAGCAGTGATCAGCCAGGTGGTAGGGAATCTGTCAACAGATGGATGGCATTTGCTGGGAAGTCTAAATTCACAATTGATGGCAACTCTACTAAAAGGGATCTTTGTGGGGATAAAATTATAATGAAAGACAATGACTTGATGGATGAAGCAACCATAGCTGAGAGAACTGCTGAATGGGGTCTTGTGATGAACTCTGGTAATTTCAAAGCAACAGGAGTAGTAGATAGAAGTTCCTCTGACAGAAGCAAAAACTTATCAGATAGACTTGTTGAATCAACAAGGACTTCTGGGGAATCAAATTATGGATCCGAGTCATCATCAGGGGTGTTCCCAAGGGTCTCACAAGAGTTGAAGGAAGCATTGGCGACGCTGCGACAGACATTTGTTGTCTCAGATGCAACCAAACCAGACTGCCCAATCATCTATGCTAGCAGTGGCTTTTTTACTATGACTGGTTATTCTTTAAAGGAAGTTATTGGAAGGAATTGCCGATTTCTTCAGGGGCCAGATACTGACAAGAATGAAGTTGCAAAAATTCGGGATGCAACTAGAAATGGGAGAAGTTATTGTGGCAGGCTTTTAAATTACAAGAAAGATGGAACTCCGTTCTGGAATCTACTCACTGTCACCCCCATCAAAGATGACCATGGCAATACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGCACACAGAAGGTGTGAATGAAAAGGCGTTACGACCAAATGGATTGCCTAAGTCATTAATTCGTTATGATGCTCGTCAAAAGGAGATAGCTTTGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGGATCCAAAATCTATTATTCGGGCTATGAATGATGATACTGCCACCAAGCATGCAGAGCAAGAGAAATTCAATATTGATTTTGCTTTGCCAAAGTCTGTCGAAATTGGGAATACGAGTGCACCTGGAAGACAAACTTCACTGAACTTCCAAGATGATATATCGGATTTGAGTTCTTGCCAGGATAGGAGCAAGTCATCAAGAAAATCAGGACGGATTTCTTTCAAAAGTTTTAAAGGAAGATCTCTAAGTTCTGTAGGGAGAGACGAAGAGAAGCCCATTGTTGAACCCGAGATTTTGATGACCAAGGAAATAGAGTGGTTCAACAGTTGGGAGTGTTCTGAAAGAGAGAGGGATATAAGGCAGGGAATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAATTTTGTGATTTCGGATCCTAGACTTCCAGATAACCCAATTATATTTGCATCTGATAGCTTTCTTGAACTTACAGAGTATACGCGAGAAGAAATTTTGGGACGTAATTGTCGGTTTCTTCAAGGACCAGAAACAGATCAGTCAACTGTCGCGAAGATTAGAGATGCTATCAGAGAACAGAGGGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAACCAATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGATCATGTAGAACCCTTGAAAAACCGCCTGTCTGAGAGAGCTGAGCAGCAAAGTGCTAAGTTGGTGAAAGCCACGGCAGAAAATGTTAATGAAGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGATGATTTGTGGGCAATTCATTCTCAACCTGTCTTTCCACGACCTCACAAAAAGGACAATCCCTCTTGGGTAGCAATTCAAAAGATAGCTGCAAGTGGTGATAAGATGGGCCTGCATCATTTTTTGCCCATAAGACCATTGGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCCAAGGTACCGGCGAACTATATGCAATGAAGGCAATGGAAAAATCTGTAATGTTAAATCGTAATAAGGTTCACCGAGCATGCATTGAAAGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAACACTATATACCTCATTTCAGACTTCTACACATGTGTGTTTGATTACTGACTTTTGCTCCGGCGGAGAGATGTTTGCATTGCTTGACAAGCAACCCATGAAGATTTTCAAAGAAGAATCAGCAAGATTCTATGCTGCAGAGGTTGTCATTTGTTTGGAATATCTCCACTGTTTAGGCATAATTTATCGGGACTTAAAGCCTGAAAATATCTTACTTCAGAAGGATGGCCATGTTGTATTAACTGATTTTGACCTCTCATTTATGACATATTGTAAACCCCAGGTTGTGAAGCACTCAGTACCTACTAATAGAAGAAGATCACGAAGTCAACCACCACCGATATTTGTTGCAGAGCCGGTTACACAATCAAACTCTTTTGTTGGAACTGAAGAATACATTGCCCCTGAAATTATAACCGGAGCTGGGCATACTAGTGCTATAGATTGGTGGACCCTCGGTATCTTGTTGTATGAGATGCTCTACGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCTAGGCAATTGATTAATGCACTATTGCAAAGAGACCCTGCCAGTCGTCTAGGTTCAATTACTGGTGCCAATGAAATCAAACAACATCCCTTTTTCCGCGGAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCATTAGATGTTCCTCTTCAATTGATAGGAAAAGATTCAATGGCAAAGGATTTGAAGTGGGAAGATGATGGGGTGCTCGTTAGCTCGATTGATATGGATATTTTTTGA 2838 0.4133 MEKQELSATYDPDASSDQPGGRESVNRWMAFAGKSKFTIDGNSTKRDLCGDKIIMKDNDLMDEATIAERTAEWGLVMNSGNFKATGVVDRSSSDRSKNLSDRLVESTRTSGESNYGSESSSGVFPRVSQELKEALATLRQTFVVSDATKPDCPIIYASSGFFTMTGYSLKEVIGRNCRFLQGPDTDKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKHTEGVNEKALRPNGLPKSLIRYDARQKEIALGSITEVVQTVKDPKSIIRAMNDDTATKHAEQEKFNIDFALPKSVEIGNTSAPGRQTSLNFQDDISDLSSCQDRSKSSRKSGRISFKSFKGRSLSSVGRDEEKPIVEPEILMTKEIEWFNSWECSERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQSTVAKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSERAEQQSAKLVKATAENVNEAVRELPDANLRPDDLWAIHSQPVFPRPHKKDNPSWVAIQKIAASGDKMGLHHFLPIRPLGCGDTGSVHLVELQGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCSGGEMFALLDKQPMKIFKEESARFYAAEVVICLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTYCKPQVVKHSVPTNRRRSRSQPPPIFVAEPVTQSNSFVGTEEYIAPEIITGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPASRLGSITGANEIKQHPFFRGINWPLIRNMSPPPLDVPLQLIGKDSMAKDLKWEDDGVLVSSIDMDIF 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi861g00002 945 ProSiteProfiles PAS repeat profile. 408 481 IPR000014 -
Gabi861g00002 945 Coils Coil 532 552 - -
Gabi861g00002 945 SMART serkin_6 609 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00002 945 ProSiteProfiles PAC domain profile. 482 536 IPR000700 -
Gabi861g00002 945 Gene3D PAS domain 397 561 - -
Gabi861g00002 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672|GO:0006468
Gabi861g00002 945 CDD PAS 431 523 IPR000014 -
Gabi861g00002 945 SUPERFAMILY PYP-like sensor domain (PAS domain) 148 240 IPR035965 -
Gabi861g00002 945 MobiDBLite consensus disorder prediction 1 23 - -
Gabi861g00002 945 Pfam Protein kinase domain 612 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00002 945 SUPERFAMILY Protein kinase-like (PK-like) 590 924 IPR011009 -
Gabi861g00002 945 CDD PAS 154 243 IPR000014 -
Gabi861g00002 945 ProSiteProfiles PAC domain profile. 201 255 IPR000700 -
Gabi861g00002 945 SMART pas_2 410 479 IPR000014 -
Gabi861g00002 945 SMART pas_2 129 198 IPR000014 -
Gabi861g00002 945 FunFam LOV domain-containing protein 397 561 - -
Gabi861g00002 945 MobiDBLite consensus disorder prediction 86 122 - -
Gabi861g00002 945 FunFam Putative LOV domain-containing protein 141 297 - -
Gabi861g00002 945 PANTHER FLIPPASE KINASE 1-RELATED 107 912 - -
Gabi861g00002 945 NCBIfam PAS domain S-box protein 434 525 IPR000014 -
Gabi861g00002 945 NCBIfam PAS domain S-box protein 153 247 IPR000014 -
Gabi861g00002 945 SUPERFAMILY PYP-like sensor domain (PAS domain) 427 523 IPR035965 -
Gabi861g00002 945 Gene3D PAS domain 141 311 - -
Gabi861g00002 945 ProSitePatterns Protein kinases ATP-binding region signature. 615 638 IPR017441 GO:0005524
Gabi861g00002 945 Pfam PAS domain 431 523 IPR000014 -
Gabi861g00002 945 Pfam PAS domain 148 244 IPR000014 -
Gabi861g00002 945 SMART pac_2 485 527 IPR001610 -
Gabi861g00002 945 SMART pac_2 204 246 IPR001610 -
Gabi861g00002 945 FunFam LOV domain-containing protein 608 692 - -
Gabi861g00002 945 ProSiteProfiles PAS repeat profile. 127 200 IPR000014 -
Gabi861g00002 945 FunFam Putative LOV domain-containing protein 693 908 - -
Gabi861g00002 945 ProSiteProfiles Protein kinase domain profile. 609 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi861g00002 945 CDD STKc_phototropin_like 607 919 - -
Gabi861g00002 945 Gene3D Transferase(Phosphotransferase) domain 1 693 911 - -
Gabi861g00002 945 Gene3D Phosphorylase Kinase; domain 1 608 692 - -
Gabi861g00002 945 MobiDBLite consensus disorder prediction 103 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi861g00002 Gabi-Chr861 27568 84063 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi861g00002 59 944 AGC Kinase Gene Family AT5G58140 74.776 0.0 1326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi861g00002 Pkinase 8.7e-60 CL0016