Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi857g00008 ATGGGTAACTCACTGCAACCTCATGGACATGGGGAGGCCAATAAGGCCATTGACCTTCAAGCACAGGTTACAGAGCCAACATGTGACATTTGCTTCGAGCCCTTTTCTCTAGACAAGCGTTTCAACAACCACAACCACTGTGTGCACCCCTTTTGCTTGGACTGCATAGCCAGATACATAGAAATTAAGGTAGAGGAGAACATAGGGAACATTCCATGTCCTGCCTTGAACTGCAAGCAACTGTTAGACCCTGTGTTTTGCAGGTCAATCATCTCCAAGCAATTGTTTGATAAATGGTTGGATGCTCTTTGCAATTCAGCAATTTTAGAGGTTCAAGACCGATCATATTGCCCTTATCAAGCATGCTCAGTTTTGGTTATCAATGAGTGCAAAGCCAAGTATGTGAAGAAAGTCCAATGCCCCAATTGCAAGCAATACTTCTGCTTCAAGTGTCAGATTCCTTGGCATGCAGGGTATAGGTGCAAGGAGAGTGGACAGCTCAGGGATAAGAATGATGTTGAGTTTGGACAACTCATGGAGAGAAAAAGATGGTTTAGATGCTATAAATGTGGTCAATGTGTTGAGCGTGTTGGAGGTTGCAAAATTGTTCATTGCAGATGCGGTGCCTTCTCTTGCCACGCATGTGAAGAACCAGCTCACTTGGGTGCTTGCCACAACCAGAACATCTACTTTCCTTATGAGAAGAAACGATCAAGCTCAAACTTGTTGCAATGA 735 0.4422 MGNSLQPHGHGEANKAIDLQAQVTEPTCDICFEPFSLDKRFNNHNHCVHPFCLDCIARYIEIKVEENIGNIPCPALNCKQLLDPVFCRSIISKQLFDKWLDALCNSAILEVQDRSYCPYQACSVLVINECKAKYVKKVQCPNCKQYFCFKCQIPWHAGYRCKESGQLRDKNDVEFGQLMERKRWFRCYKCGQCVERVGGCKIVHCRCGAFSCHACEEPAHLGACHNQNIYFPYEKKRSSSNLLQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi857g00008 244 SUPERFAMILY RING/U-box 98 163 - -
Gabi857g00008 244 ProSiteProfiles TRIAD supradomain profile. 24 237 IPR044066 -
Gabi857g00008 244 SUPERFAMILY RING/U-box 172 226 - -
Gabi857g00008 244 SUPERFAMILY RING/U-box 25 110 - -
Gabi857g00008 244 FunFam RBR-type E3 ubiquitin transferase 23 110 - -
Gabi857g00008 244 Pfam IBR domain, a half RING-finger domain 98 161 IPR002867 GO:0008270
Gabi857g00008 244 ProSitePatterns Zinc finger C2H2 type domain signature. 28 49 IPR013087 -
Gabi857g00008 244 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Gabi857g00008 244 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 23 221 IPR031127 GO:0004842|GO:0016567
Gabi857g00008 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 110 IPR013083 -
Gabi857g00008 244 ProSiteProfiles Zinc finger RING-type profile. 28 77 IPR001841 -
Gabi857g00008 244 SMART ibrneu5 97 161 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi857g00008 Gabi-Chr857 89722 91196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi857g00008 27 218 C3H Transcription Factor Family AT2G19610 25.490 2.30e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi857g00008 K11975 - rcu:8263174 278.87