Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi857g00007 ATGGGAAACTCATTGCAACCTCATGGACATGTGGAGGCCAACAAGGCCATTGACGTTCAAGCACAGGGTAAAGAGATAACATGCATGATTTGCATCGAGCCCTTTTCTCGAGGCAAGCTTTTCAAAAATAACGAGCGATGTGTGCACCCTTTTTGCATGGACTGTATAGCCAAACACATAGAAATCAAGGTAGAGAACAACACAGGGAATATCCCATGTCCTGCCTTGAACTGCGAGCAATTGTTAGACCCTATCTTTTGCAGGTCAATCATCTCCGAACAATTGTTTGTTAAATGGTGTGATGCTCTTTGCAATTCAGCAGTTTTAGAGATCCAAGACAGATCATATTGCCCATATCAAACATGCTCAGCTTTGGTTATCAACGAGTGCAAAGGCAAGTCTGTGAAGAAAGTACAATGCCCCAATTGCAAGCAATACTTCTGCTTCAAGTGCAAGACTTCGTGGCATGCTGGGTATAAGTGCAAAGAGAATGGACAGCACAGGGATAGGAATGATGTTTTGTTTGGAGAACTCGTGGAGAGAAATAGGTGGCGTAGATGCCATAAATGTGGTCATTTTATTGAGCGTGTTGGAGGTTGCAGAACTATTCACCGCAGGTTATCTTGTTGCTCAGTTTAA 639 0.4319 MGNSLQPHGHVEANKAIDVQAQGKEITCMICIEPFSRGKLFKNNERCVHPFCMDCIAKHIEIKVENNTGNIPCPALNCEQLLDPIFCRSIISEQLFVKWCDALCNSAVLEIQDRSYCPYQTCSALVINECKGKSVKKVQCPNCKQYFCFKCKTSWHAGYKCKENGQHRDRNDVLFGELVERNRWRRCHKCGHFIERVGGCRTIHRRLSCCSV 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi857g00007 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 109 IPR013083 -
Gabi857g00007 212 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 23 209 IPR031127 GO:0004842|GO:0016567
Gabi857g00007 212 SMART ibrneu5 97 161 IPR002867 GO:0008270
Gabi857g00007 212 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Gabi857g00007 212 ProSiteProfiles TRIAD supradomain profile. 24 212 IPR044066 -
Gabi857g00007 212 SUPERFAMILY RING/U-box 23 106 - -
Gabi857g00007 212 SUPERFAMILY RING/U-box 98 163 - -
Gabi857g00007 212 FunFam RBR-type E3 ubiquitin transferase 23 110 - -
Gabi857g00007 212 Pfam IBR domain, a half RING-finger domain 98 161 IPR002867 GO:0008270
Gabi857g00007 212 ProSiteProfiles Zinc finger RING-type profile. 28 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi857g00007 Gabi-Chr857 56622 57260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi857g00007 27 203 C3H Transcription Factor Family AT2G19610 23.936 9.32e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi857g00007 K11975 - pvy:116124878 256.914