Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi855g00009 ATGGCTTCAAAGTTACGTAATTCCCTCCCAACAATATTATCAACGTTCCTCATTCTCCTCCTACCCTTACTTGCCTCTCTAGCTTTTGCAGACAACCCTCCCACAGCTTCTGTCTCTCCTGGAACCATATGCAAATCCACCCCTGACCCATCTTATTGTAATTCCGTGCTCCCTCCCCAAAAGGGAAACGTCTACGATTATGGCCGGTTCTCGGTCACCAAGTCCTTATCACATGCCAGCGATTTCTTGAACTTAGTTGACAAATATCTCCAACGCCGCTCCACTCTTTCCACCGCAGCTATCATGGCACTTGAAGATTGTCAAACCCTTGGCGAACTCAACTATGATTTCCTTTCTAGTTCTTCACAAACTGTGAACAAGACAACAAGGTTTCTACCCAGTGTGCAAGCTGATGATATCCAAACATTGCTCAGTGCCATTCTAACAAACCAACAAACCTGCATGGATGGCCTTCAAGCCACTGCTTCCGCTTGGAGAGTGAAAAATGGACTCTCTCTTCCACTTTCTAATGACACCAAACTCTACAGTGTCTCTCTTGCTCTTTTCACCAAAGGGTGGGTTCCCAGAACCAATAACAAAGCCAATACCACATTTCAACCAACCAGAAAACAACTTGGGTTTCGAAACGGGCGTTTGCCGCTTAACATGTCAAGTAAAACTCGCGCGATCTACGAATCGGTGAGTCGGAGAAAACTCCTTCAGGATACAACAGGCGACGAGGTTGAAGTGAGAGACATCGTGACGGTGAGTCAAGATGGAAGTGGAAACTTCACCACCATCAACGATGCCATCGCTGCAGCGCCTAACAAGTCTTCCTCATCGGTAGGGTACTTCTTAATCTATGTCACCGCAGGTCTTTACGACGAAAACGTGTCAATTGATAAGAAAAAAACAAACTTGATGATGGTTGGAGATGGCATCAACAAGACAATTATTACTGGCAATCGTAGTGTCGTTGATGGCTGGACCACCTTTAAGTCAGCAACCTTTGCTGTGGTTGGTCAAGGATTTGTGGGTGTGAATATAACTATTCGGAACACTGCTGGGGCGGAGAAGCACCAAGCAGTGGCACTTCGAAATGGAGCAGATTTGTCCACGTTTTACAGCTGCAGCTTCGAGGGGTACCAGGACACATTATATGCACATTCACTAAGACAATTCTACAGGGAATGTGACATTTACGGCACTGTAGATTTCATATTCGGAAACGCCGCAACAGTGTTCCAAAACTGCAACCTCTATCCTCGTCTCCCAATGAGTGGTCAATTCAACGCAATCACCGCACAAGGCCGAACCGACCCGAACCAAAACACGGGCACTTCTATCCACAACTGTACAATCAGAGCAGCTGATGATTTGGCTGAAAGCAACGGTACAGTTGCAACATATCTTGGAAGGCCTTGGAAGCAATATTCGAGGACGGTTTATATGCAGACATTTATGGACAGTGTGATTGATGCTTCCGGGTGGCATGAATGGGACGGTGATTTGGGTTTGAGTACATTGTATTATGCTGAGTTTAATAACAGTGGATCAGGATCTACCACGGACAACAGAGTGACGTGGCCAGGTTACCAGGTGATTAATGCCACTGATGCTTCTAATTTTACAGTCTCTCAGTTCTTGCTTGGAGATGACTGGTTGCCACGTACGGGAGTGACTTACGCCAGCAACTTAATGTAG 1704 0.4613 MASKLRNSLPTILSTFLILLLPLLASLAFADNPPTASVSPGTICKSTPDPSYCNSVLPPQKGNVYDYGRFSVTKSLSHASDFLNLVDKYLQRRSTLSTAAIMALEDCQTLGELNYDFLSSSSQTVNKTTRFLPSVQADDIQTLLSAILTNQQTCMDGLQATASAWRVKNGLSLPLSNDTKLYSVSLALFTKGWVPRTNNKANTTFQPTRKQLGFRNGRLPLNMSSKTRAIYESVSRRKLLQDTTGDEVEVRDIVTVSQDGSGNFTTINDAIAAAPNKSSSSVGYFLIYVTAGLYDENVSIDKKKTNLMMVGDGINKTIITGNRSVVDGWTTFKSATFAVVGQGFVGVNITIRNTAGAEKHQAVALRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAATVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRAADDLAESNGTVATYLGRPWKQYSRTVYMQTFMDSVIDASGWHEWDGDLGLSTLYYAEFNNSGSGSTTDNRVTWPGYQVINATDASNFTVSQFLLGDDWLPRTGVTYASNLM 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi855g00009 567 Pfam Plant invertase/pectin methylesterase inhibitor 42 188 IPR006501 GO:0004857
Gabi855g00009 567 Gene3D - 248 566 IPR012334 -
Gabi855g00009 567 NCBIfam pectinesterase inhibitor domain 12 190 IPR006501 GO:0004857
Gabi855g00009 567 SUPERFAMILY Pectin lyase-like 252 563 IPR011050 -
Gabi855g00009 567 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Gabi855g00009 567 SMART PMEI_2 35 188 IPR006501 GO:0004857
Gabi855g00009 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
Gabi855g00009 567 CDD PMEI-like_3 42 193 - -
Gabi855g00009 567 FunFam Pectinesterase 41 191 - -
Gabi855g00009 567 FunFam Pectinesterase 247 566 - -
Gabi855g00009 567 PANTHER PECTINESTERASE 28 556 - -
Gabi855g00009 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
Gabi855g00009 567 Pfam Pectinesterase 254 552 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi855g00009 Gabi-Chr855 71595 73821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi855g00009 13 567 Carbohydrate Esterase AT4G02330 61.336 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi855g00009 K01051 - gmx:100792319 917.916