Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi854g00001 ATGGAAAAGGAAAACCTCGTCGTTACGGCGCTTCTTTCGTCTTTCTTTCAAGTGACTTTTGACAGGTTGTTTTCAAGTAATCTCATAGACTACTTCCGTAGAAGCAAACTTGAAGATGTGCTGGTGGACAAACTTAAGATTACTGTTGATTCTATCAACAAAGTGCTGGACGAAGCAGAGACAAAGCAGTACCAAGACACATCGGTGAAGGAGTGGCTTGATGAAGTTAAACATGCTGTGTATGAGGCTGACAAGTTGTTAGATGAGATTGCCACTGATGCACCACTCAAGAAGCTTAAAGCTGAATCTCAAACTGCTGCCAGCCAGGTACGAGGCTTCTTTTCGGCTTTTACTGCTAATCCATTTGAATCTAGGCTCAAAGAATTGCTACAGAACTTAGATTCTCTTGAAAAGCAAAAGGGAAAGTTAGAATTGAAAGAAGACACTCGCGCTAGCAATGAAGGTGGAGTTAGTTGGAAACTCCCTAAAAGATTGCCAAGTACATCTTTGGTGGGACTATCGAGCACCATATATGGTAGAGATGAGGATAGAGAGCAAATAATCAAATTTTTACTTTCAGACAATGTCAATGACAACTCTGTACCTATAATTAGCATAGTGGGTATCGGTGGGATGGGTAAGACCACCCTTGCTCAGCTCGTGTACAATGACCAAAGCTTGAAGGAGCAGTTTGAACTTAAAGCTTGGGTCCATGTGTCAGAATATTTTGATATTGTTGGAGTTACAAAAGCAATTCTTAAGTCATTCCAGTGTTCAGCAGATGCTGAAGAATTGAATTCACTTCAACTTGAATTGCAGAAGACACTAATGGGCAAGAAATATTTGCTTGTTCTAGACGATGTCTGGAATGAGAATTGGGCAAGTTGGGAAGCCTTACAAGTTCCTCTTAATTATGGATCTTCTGGAAGTAGAATTCTTGTCACAACACGTGATAAGAAGGTAGCATCAGCCATGAAATCCACCCAACTACTTCCTTTAAAGGAATTGAAGAAAGATGATTGTTGGAGTTTATTTGAGAGACATGCTTTTCACAACAAGAATGTAAGTGAACATCCAAATCTTGAATCAATTGGCAAGAAAATCGTTAAGAAGTGTGGAGGGTTACCTTTAGCTATAAAAGCATTGGGAAATCTCTTGCTAATAAAATTCTCTCAAAGTGAATGGGTTAAGATATTGGAGACTGATATGTGGCGTCTATCTGTTGATAGTAACATTAACCCGACAGTGAGATTGAGTTACCATGTTCTTCCTTCGAATCTGAAGCGTTGTTTTGCTTATTGTTCTATGTTTCCCAAAGGCTATCCGTTTGAAAAGGATGAATTAATCCAGTTTTGGATGGCAGAAGGTTTGCTGAAGTGCTGCGGAACAGATAAAAGTGAAGAAGATTTGGGTGATGAATTCTTCAATCAGCTTGAGTATATTTCATTTTTCCAACAATCAGCAGGCAGTTTCTTCGTGATGCATGATCTTGTCAATGATTTAGCAAAATCAGTGTCAGGAGAATTCTGTTTACGAATAGAGGGTGATCTTATCCCAAAGCTGTTAGATAGGGTGCAAGATATCCCTGATAAGACACGTCACATTTGGTGCTCAAATGATATAAAAGACGGTGATAAAATATTAGAGCATATTTACAAGTGTAATGGATTACGCAGTCTGATATGGAAACGAGGTGCCCGAGGCTTCAAGATATGCAACAATGTACAACATGCTCTGTTTTCGAGACTTAAATATTTGCTGGTGTTATCATTCAGATATCATGATCTCTCAGAGCTAGATGATGAGATAAGCAATTTAAAGCTTTTGCGCTATCTAGACCTTTCTTACACTGAGATTAAAAGGTTACCTGATTCCATTTGTGTGCTGCATAATTTGCAGACTCTGAAATTGGAAGATTGCCATAATTTGACTGAGCTCCCTTCAGATTTTTATAAACTCATCAATTTACGACATCTTCACCTGGAAGGCACTCGAATAAAGAAGATGCCAAAGCATATAGGAAGGCTAATCCATCTTCGGACGCTGACTCATTTTGTTGTGAGAGAGAATGGTGGATCTGATATTAAGGAGTTGGCCAAACTCCACCATCTTCAAGGAAGACTTAACATTTCAGGGTTGGGAAATATCACTGATCCTGCAGATGCCGCAGAAGCCAATTTGAAAGATAAGAAACATTTAGAAAAATTATTGTTGAAGTTCCATGAAAGAACAGAAAGCCAATCAACGAGTGGAGAAAACGATGACTTAATATTTGAAATGCGTGTCTTGGAGGCACTTCAACCAGATAGCAACCTGAATAGCCTCACTATCAGATACTATCGTGGCAATAGCTTTTCAGATTGGCTTGGGGATTCTCATTTTTCCAATTTAGTGTCTATGAACCTGGGTGGATGCCGATTCTGTTCAAGCTTGCCACCACTTGGGCTGCTCTCCTCCCTCAAGGAGCTTTTTATTTCAGACTTTGATGAAATAGAGATAATTGGTAGAGAGTTTTACGACAATTATTCATCAAATGTTCCATTCAGGTCCCTTGAAATTTTTGAAATTGAGAATATGCCCAAATGGAAGGAATGGTTCTGTCCGGATGATGGTGAATGTTTCCCATTTCTTAAAGAGCTTTCAATTCAAAACTGTCCGAAGTTGAAAAGTGGGCTGCCTCAACACCTTCCTTATTTGAAAAAACTGGAGATTAGTGATTGCCAAGAGCTTGAGGCTTCACTTCCCAAGACTCCTAATGTTGGGGAGTTACGACTTGATGGATGTGAAAACATTTTGGTAAATGAATTGCCATCCACCTTGAAAAAAGCCTTCATTAGTGGTACTGGAGTCCTTGAGTCCTACCTGGAGCAAGTTCTATTGAATAATGCTTCTCTTGAAGTGTTAGTGCTTACAGATTTTAATGGTCCAGATCTAAAATGCTCCTCTTTGGATTTGCGTTGCTGTAATTCTCTTCGCACACTGTCTTTTAGAAGCTGGTACTCCTCCTGGTGGCCTTTCTCACTAAGCTTGTTCACCAATCTTCATTCTCTGTACTTGAATGATTGTCCACAGCTGATATCATTTCCTGGGGAATGTTTTCCTTTGAGTCTAAGCATCCTCTATATAAGGAACTGCCCCAAACTGATTGCTTCGAGAGAGGAGTGGGGTTTGTCCAAACTTCATTCTTTGAAAGATTTCAGTGTTACTGACGACTTTGAAAACGTGGAGTCTTTCCCGGAGGAGAGTCTGCTGCCACCTAATATTAATATTCTCTACTTGGAGAATTGTTCAAAGCTAAGAATAATTAACAAAAGGGGTCTTCTCCACCTCAAATCTCTCAAATACCTATATATTTGGAATTGCCCTCGTGTTGAGTACATGCCAGAGGAGGGTCTACCCAACTCTCTTTTTGCTTTATCGATTTGCAATTGTCCATTCCTTAGGCAGCGGTACCGAAAGGAGGAAGGCGAGCATTGGCATAAAATTAGTCACATTCCTTCTGTGTCTATTTGGTAG 3516 0.3976 MEKENLVVTALLSSFFQVTFDRLFSSNLIDYFRRSKLEDVLVDKLKITVDSINKVLDEAETKQYQDTSVKEWLDEVKHAVYEADKLLDEIATDAPLKKLKAESQTAASQVRGFFSAFTANPFESRLKELLQNLDSLEKQKGKLELKEDTRASNEGGVSWKLPKRLPSTSLVGLSSTIYGRDEDREQIIKFLLSDNVNDNSVPIISIVGIGGMGKTTLAQLVYNDQSLKEQFELKAWVHVSEYFDIVGVTKAILKSFQCSADAEELNSLQLELQKTLMGKKYLLVLDDVWNENWASWEALQVPLNYGSSGSRILVTTRDKKVASAMKSTQLLPLKELKKDDCWSLFERHAFHNKNVSEHPNLESIGKKIVKKCGGLPLAIKALGNLLLIKFSQSEWVKILETDMWRLSVDSNINPTVRLSYHVLPSNLKRCFAYCSMFPKGYPFEKDELIQFWMAEGLLKCCGTDKSEEDLGDEFFNQLEYISFFQQSAGSFFVMHDLVNDLAKSVSGEFCLRIEGDLIPKLLDRVQDIPDKTRHIWCSNDIKDGDKILEHIYKCNGLRSLIWKRGARGFKICNNVQHALFSRLKYLLVLSFRYHDLSELDDEISNLKLLRYLDLSYTEIKRLPDSICVLHNLQTLKLEDCHNLTELPSDFYKLINLRHLHLEGTRIKKMPKHIGRLIHLRTLTHFVVRENGGSDIKELAKLHHLQGRLNISGLGNITDPADAAEANLKDKKHLEKLLLKFHERTESQSTSGENDDLIFEMRVLEALQPDSNLNSLTIRYYRGNSFSDWLGDSHFSNLVSMNLGGCRFCSSLPPLGLLSSLKELFISDFDEIEIIGREFYDNYSSNVPFRSLEIFEIENMPKWKEWFCPDDGECFPFLKELSIQNCPKLKSGLPQHLPYLKKLEISDCQELEASLPKTPNVGELRLDGCENILVNELPSTLKKAFISGTGVLESYLEQVLLNNASLEVLVLTDFNGPDLKCSSLDLRCCNSLRTLSFRSWYSSWWPFSLSLFTNLHSLYLNDCPQLISFPGECFPLSLSILYIRNCPKLIASREEWGLSKLHSLKDFSVTDDFENVESFPEESLLPPNINILYLENCSKLRIINKRGLLHLKSLKYLYIWNCPRVEYMPEEGLPNSLFALSICNCPFLRQRYRKEEGEHWHKISHIPSVSIW 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi854g00001 1171 Pfam Rx N-terminal domain 12 101 IPR041118 -
Gabi854g00001 1171 Gene3D Ribonuclease Inhibitor 541 942 IPR032675 -
Gabi854g00001 1171 SMART LRR_typ_2 606 629 IPR003591 -
Gabi854g00001 1171 SMART LRR_typ_2 653 676 IPR003591 -
Gabi854g00001 1171 Gene3D - 163 331 IPR027417 -
Gabi854g00001 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 434 IPR027417 -
Gabi854g00001 1171 Coils Coil 119 146 - -
Gabi854g00001 1171 FunFam Probable disease resistance protein At1g61300 162 329 - -
Gabi854g00001 1171 SUPERFAMILY L domain-like 493 911 - -
Gabi854g00001 1171 Gene3D - 335 419 IPR042197 -
Gabi854g00001 1171 PANTHER DISEASE RESISTANCE PROTEIN RP 44 908 IPR044974 GO:0006952
Gabi854g00001 1171 Pfam NB-ARC domain 182 400 IPR002182 GO:0043531
Gabi854g00001 1171 SUPERFAMILY RNI-like 850 1142 - -
Gabi854g00001 1171 Gene3D - 420 505 IPR036388 -
Gabi854g00001 1171 Coils Coil 42 62 - -
Gabi854g00001 1171 Gene3D - 34 128 - -
Gabi854g00001 1171 Gene3D Ribonuclease Inhibitor 943 1162 IPR032675 -
Gabi854g00001 1171 PRINTS Disease resistance protein signature 275 289 - -
Gabi854g00001 1171 PRINTS Disease resistance protein signature 372 386 - -
Gabi854g00001 1171 PRINTS Disease resistance protein signature 203 218 - -
Gabi854g00001 1171 PRINTS Disease resistance protein signature 894 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi854g00001 Gabi-Chr854 11704 16724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi854g00001 204 729 WRKY Transcription Factor Family AT5G45050 22.832 4.98e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi854g00001 - - gmx:100777510 1294.26