Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi852g00002 ATGATGACAACTTCATTGGCGAATTCTGCTGACAATTCAGCCATTGGTTCTTCCAATACCAATGGCGCCGCACGCCCTCTCCGGTCAGCATATGTTCCTCCACATCTTCGCAATCGGCCGGCGAATACCAATGCCTCGGAGCTCCCAGCGGTGGCATCATACCCTTCTTTGGCAGCTATTGATCGGGTGAATTATGGTGGTCCGGCTGCTGGTCCTCGTGGGGGTAGTTCCTCTAAGCCGGATCTCCAGCAAGGATATGGTTCTAGTGTTCAGACTAGTGGTGGATGGAATAGTAGAGGGGTAGGGAGAGACCGCGGGAGGCGTGAGGTGAACCCTTTTGAGAATGATGAGGCTGAGGATCAATCTCTTACTGATCAAGAGAACACAGGCATTAACTTTGAAGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTGCCTCCGCCTGTGAATACTTTCGCAGAGATAGATTTGGGCGATGCATTGAATCAAAATATACAGAGATGCAAGTATGTCAAACCAACCCCGGTTCAGAGGTATGCCATACCGATTTCTCTTGCTCGGCGAGATTTGATGGCTTGTGCTCAGACAGGGTCTGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGTGGAATCATGAGGGGGCAGCATGTTCAAAGACCGCGTGTAGCACGGACTGCTTTTCCTCTGGCACTTATTCTCTCCCCTACCCGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATCAACCAACAGTTGCGGGAGCTCGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGCCTGGTAGATTTGCTTGAGAGGGCTAGAGTCTCATTACAGATGATAAGCTATTTGGCTCTTGATGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAGCAAATGGACATGCCTCCTCCAGGCTTGAGACAGACACTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCAGATTTTCTTTCACATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTACTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGGGAAAATGGAATTGATGGCAAGCAAGGTCTGACATTAGTTTTTGTCGAAACAAAGAAAGGGGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAACTAGCATTCATGGTGACAGATCACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGAGTGGAAACACACCAATTCTAGTGGCAACCGATGTTGCAGCACGTGGTCTTGATATTCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCTAATGATATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGGAAAATGGGATTAGCAACAGCCTTCTTCAATGACGGTAATTTGTCCTTGGCTAAACCATTAGCTGATCTGATGCAAGAGGCAAAGCAAGAAGTACCTGCCTGGCTCACACGTTATGCACAAAGGTCTTCTTACGGTGGTGGCAACAGAAACCGGCGAGCAGGGGGAGCCAACCGTTTTGGCGGCCGCGACTTTAGGAAGGAGGGCTCATTTAATAAAGCAACAGATTACTATGGTGGAACAGGTGGATATGGTGGAGGGTATGGTCAAGGTGTGACAAGTGCCTGGGATTAG 1812 0.4757 MMTTSLANSADNSAIGSSNTNGAARPLRSAYVPPHLRNRPANTNASELPAVASYPSLAAIDRVNYGGPAAGPRGGSSSKPDLQQGYGSSVQTSGGWNSRGVGRDRGRREVNPFENDEAEDQSLTDQENTGINFEAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLARRDLMACAQTGSGKTAAFCFPIISGIMRGQHVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMISYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGLRQTLLFSATFPKEIQRLASDFLSHYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIDGKQGLTLVFVETKKGADALEHCLCVNGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDGNLSLAKPLADLMQEAKQEVPAWLTRYAQRSSYGGGNRNRRAGGANRFGGRDFRKEGSFNKATDYYGGTGGYGGGYGQGVTSAWD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi852g00002 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 546 IPR001650 -
Gabi852g00002 603 MobiDBLite consensus disorder prediction 77 98 - -
Gabi852g00002 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 522 IPR027417 -
Gabi852g00002 603 CDD DEADc_DDX3_DDX4 154 374 IPR044763 GO:0003724|GO:0005524
Gabi852g00002 603 MobiDBLite consensus disorder prediction 101 115 - -
Gabi852g00002 603 Gene3D - 108 369 IPR027417 -
Gabi852g00002 603 SMART ultradead3 172 383 IPR014001 -
Gabi852g00002 603 Gene3D - 370 551 IPR027417 -
Gabi852g00002 603 MobiDBLite consensus disorder prediction 68 129 - -
Gabi852g00002 603 MobiDBLite consensus disorder prediction 1 26 - -
Gabi852g00002 603 Pfam DEAD/DEAH box helicase 177 357 IPR011545 GO:0003676|GO:0005524
Gabi852g00002 603 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 546 - -
Gabi852g00002 603 CDD SF2_C_DEAD 380 516 - -
Gabi852g00002 603 Pfam Helicase conserved C-terminal domain 392 507 IPR001650 -
Gabi852g00002 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 368 IPR014001 -
Gabi852g00002 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Gabi852g00002 603 SMART helicmild6 426 507 IPR001650 -
Gabi852g00002 603 FunFam ATP-dependent RNA helicase RhlB 371 550 - -
Gabi852g00002 603 FunFam Probable ATP-dependent RNA helicase DDX4 116 370 - -
Gabi852g00002 603 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi852g00002 Gabi-Chr852 43397 51009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi852g00002 151 539 Eukaryotic Initiation Factors Gene Family AT3G19760 31.218 6.10e-60 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi852g00002 K11594 - gmx:100818326 967.607