Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi843g00006 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTCATGAACTTCATCCTCAACAATGGTATCCATTGTTGGAGAATGGTTCCAAAACTTGCAGGTCTTCTAAGATGTGGAAAGAGCTGCAGACTAAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGTTTTACTGAAATGGAAGAGGATCAAATTATACAACTGCATTCAAGACTTGGTAACAGATGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACCGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAAAAGAGGCTGAAGCTCCTTGGTGTGGACCCTGTGACCCACATGCCAACTGAACAAAAGGATCACATTGATGAGGACAATAATAATACCAAACTACAACCAAATGTTTCCCAAGGTTCTGAAGACAATGTGGAGATTAAATCCTTGGAAAGTGATGGCACCAAAGAAATGACAAAAGCAGAAGGGAAAGGAGAGGAAAACATGGTGACTTGGGATGACACTGCTGAACTTTTAAACAATTTTGAAATGCTATGCTCACAATTGGATATGGGATCATGGGTGAGCCAAGAAACCAACACTAGTACTAATTCTTTATGTAGTTCCTCTGTCTCTGTGGATGATTCTAGCAACCTTTCAATGGGTGAATCCACTTACCTTCAGGAAAACTCCTTAAAGCAATGGGTTGATAGTATGGATTCCATTCTCTCATGGGATGGTTTCAACCCTCTTGACCAAGATATTTTCTTCATGGAAAATAGGGAATAA 822 0.4051 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGVDPVTHMPTEQKDHIDEDNNNTKLQPNVSQGSEDNVEIKSLESDGTKEMTKAEGKGEENMVTWDDTAELLNNFEMLCSQLDMGSWVSQETNTSTNSLCSSSVSVDDSSNLSMGESTYLQENSLKQWVDSMDSILSWDGFNPLDQDIFFMENRE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi843g00006 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi843g00006 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi843g00006 273 FunFam MYB transcription factor 68 129 - -
Gabi843g00006 273 CDD SANT 16 61 IPR001005 -
Gabi843g00006 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi843g00006 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi843g00006 273 SMART sant 66 114 IPR001005 -
Gabi843g00006 273 SMART sant 13 63 IPR001005 -
Gabi843g00006 273 MobiDBLite consensus disorder prediction 141 155 - -
Gabi843g00006 273 FunFam MYB transcription factor 11 67 - -
Gabi843g00006 273 Gene3D - 11 67 - -
Gabi843g00006 273 Gene3D - 69 161 - -
Gabi843g00006 273 CDD SANT 70 110 IPR001005 -
Gabi843g00006 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gabi843g00006 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi843g00006 273 MobiDBLite consensus disorder prediction 128 155 - -
Gabi843g00006 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi843g00006 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi843g00006 Gabi-Chr843 82878 83989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi843g00006 1 196 MYB Transcription Factor Family AT5G16600 57.635 7.75e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi843g00006 Myb_DNA-binding 5.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi843g00006 K09422 - gmx:100783231 466.848