Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi836g00002 ATGGATCAACTGGGAAATAAACCTCCTTCTTCTTCAACCAAGGTTGAAAGAAGGGTCATAGAGAAAAACAGAAGAAACCATATGAAGATGCTTTACTCCAAACTCAATTCTCTTCTTCCTAACTATAACCCCAAGGAAGCGTTACCATTAACGGACCAAGTAGATGAGGCAATCAAATACATAAAGATCCTAGAAGGGAAGGTGAAGATGGCTCAAGAGAAGAAAGAGAGCTTTGGGGGAAAGAAGAGATCACATGATTGCTGCTCTAGTTCTTTTGCTACAACTAGCTGCCCAAAATCACCACAACTTGAAGTTCACGAAATGGGTTCTTCTCTAGAACTTGTTCTGACTTGTGGGTTAGAAACCCAGTTCATTTTCTATGAAATCATTCGCATACTTCATGAAGAGAACATAGAGGTCAAGAGTGCCAATTCCTCACTGGCCGGTTATTCAATGCTTCATGTTGTGCATGCTGAAATTCCGCAATCTTATCTTCAGATTGGAGCGACCAAAGTAAGCGAGAGATTGAAGAGGTTTGTGAATGGATCCTCATAG 555 0.409 MDQLGNKPPSSSTKVERRVIEKNRRNHMKMLYSKLNSLLPNYNPKEALPLTDQVDEAIKYIKILEGKVKMAQEKKESFGGKKRSHDCCSSSFATTSCPKSPQLEVHEMGSSLELVLTCGLETQFIFYEIIRILHEENIEVKSANSSLAGYSMLHVVHAEIPQSYLQIGATKVSERLKRFVNGSS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi836g00002 184 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 180 - -
Gabi836g00002 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 84 IPR036638 GO:0046983
Gabi836g00002 184 Gene3D - 6 89 IPR036638 GO:0046983
Gabi836g00002 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Gabi836g00002 184 FunFam Transcription factor bHLH162 5 90 - -
Gabi836g00002 184 Pfam Helix-loop-helix DNA-binding domain 15 64 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi836g00002 Gabi-Chr836 57830 58666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi836g00002 12 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.222 4.92e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi836g00002 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi836g00002 - - gmx:100817883 274.248