Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi830g00001 ATGACTTCTAAGCCTGACTATAGAGATGGCTCCAATGGTGACTCTGCCCCAAAGACAATCCACTTTTTCAGGATCATACACCCTAAAACCCTTTTGGAGGGAAAACTAGTAAGCATATATGTTTCCTTTTTCAAGATCATGTCTCTATCCACTTTTTTTGCTACTCACCGAAATAATGCTACATTCTCAACATTTATGCACTTGATGCTTCCAATAAAGTTTGTGAGGAGATATGGAGAAAGCTTACCAAACACAATACTTCTCAAGCTTTCAAGCGGTGCAGAATGGACAGTAAACTTGGAGAAACATGATGGTAGAGTTTGGCTTCAAAATGGTTGGAAAGAATTTGTGGAGTATCACAGTCTAGCTTATGGGCACCTATTGGTTTTCAGATATGATGGAACATCCCATTTTCATGTACTCATCTTTGACCCGAGTACCATGGAAATTGACTACCCTTTCAATATCTTAGATCCTAAAAGGGCCCGCAATGGTGAACTTAAATCAAGTAAGAAACGGAGAACAAATGGAAATAGTAACAAATATGAGAGTTATTCCAATTTGCAGGACACTTCCTTTCATTCAACAGTCAAAGACTGGAAAGGCATGGTTCTAGATTCCAAGTGTTTATTGAAGAATCCAAGTGAAAAAAAGAGAAACATTGACCAGCGTACTGAAATGTCATCCAATACTTCCTTCACAGTGGAAATAAAATCATGGAACTTAAGGAAATTCATTGCCTTGCCAAAAGGCTCTCTGAAGGGCTACGTCAAACCTGGTGGACAAAATGTTACGCTGCTGGTTGGTAACAGATCATGGAAGGTTAATTTGATCTATTACCCAAAGAAACCAAGGACTTGCTTCTCTGCACGTTGGTTAATTTTCGCAAGGGAAAATGATTTAAAAGTAGGAGATGTTTGCTTGTTCGAGCTGTTAGAGTGTAGTGATGATGACATGGTAATCAAGGTTTCCATTTCTAAACACTCTTCTGTTAAGCCGTAA 1002 0.3872 MTSKPDYRDGSNGDSAPKTIHFFRIIHPKTLLEGKLVSIYVSFFKIMSLSTFFATHRNNATFSTFMHLMLPIKFVRRYGESLPNTILLKLSSGAEWTVNLEKHDGRVWLQNGWKEFVEYHSLAYGHLLVFRYDGTSHFHVLIFDPSTMEIDYPFNILDPKRARNGELKSSKKRRTNGNSNKYESYSNLQDTSFHSTVKDWKGMVLDSKCLLKNPSEKKRNIDQRTEMSSNTSFTVEIKSWNLRKFIALPKGSLKGYVKPGGQNVTLLVGNRSWKVNLIYYPKKPRTCFSARWLIFARENDLKVGDVCLFELLECSDDDMVIKVSISKHSSVKP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi830g00001 333 ProSiteProfiles B3 DNA-binding domain profile. 231 329 IPR003340 GO:0003677
Gabi830g00001 333 SUPERFAMILY DNA-binding pseudobarrel domain 228 327 IPR015300 -
Gabi830g00001 333 Gene3D - 40 147 IPR015300 -
Gabi830g00001 333 CDD B3_DNA 243 327 IPR003340 GO:0003677
Gabi830g00001 333 SMART B3_2 233 329 IPR003340 GO:0003677
Gabi830g00001 333 SMART B3_2 52 146 IPR003340 GO:0003677
Gabi830g00001 333 CDD B3_DNA 42 144 IPR003340 GO:0003677
Gabi830g00001 333 Pfam B3 DNA binding domain 234 323 IPR003340 GO:0003677
Gabi830g00001 333 Pfam B3 DNA binding domain 59 144 IPR003340 GO:0003677
Gabi830g00001 333 SUPERFAMILY DNA-binding pseudobarrel domain 60 146 IPR015300 -
Gabi830g00001 333 Gene3D - 212 330 IPR015300 -
Gabi830g00001 333 ProSiteProfiles B3 DNA-binding domain profile. 53 146 IPR003340 GO:0003677
Gabi830g00001 333 PANTHER B3 DOMAIN-CONTAINING 18 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi830g00001 Gabi-Chr830 31856 33137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi830g00001 216 324 B3 DNA Binding Superfamily AT3G18990 32.143 4.52e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi830g00001 B3 2.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi830g00001 - - aprc:113849508 315.079