Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi82g00011 ATGGCTTCCACAAATGATTACAAAGCAAGTGAGCTATTCCAAGCTCAAGCTCATTTGTACAGAATGATGTATAGCTTCCTTAATCCCATGTGCATCAAGTGGGCCATTGACCTTGGCATTCCTGATATCATCCACAATCATCCCCATCCCATTACTCTTCCTGAGCTTGTTTCTGCTCTTAATGTTCCACTTTCTAAAGCTACTTGTGTTGAGCGCCTCATGCGCTTATTGGCACACAATGACTTCTTTGCAATCATCAAAATCGATGACACCAGAGAAGCATATGCTCTTACTCCATCTTCACAACTCCTTGTCAACGGCACTGATCACTGTTTATCTTCGATGGTTCATTTGTTAAATAGCCCTACTCTTGTTGGCTCATATCATCACTTGGGAAAATGGACTTCTGGGGAGGACCTCACGATCGTTGAGACCGCATTAGGACCCGGAGGCTATTGGGATTTTATTCATCAAAATCCCACTCATTTGAAGACATTCAATGAGGCTATGGAAAGTGATTCTCACGTTGTAAGGTTGGCGTTGAGAGATTGCAAATCAGTTTTTGAGGGCCTCGATTCCATAGTTGATGTTGGTGGTGGAACCGGAAACACTGCTAAGATTATATGTGAGGCATTTCCTAATTTAAAATACATAGTGTTGGACCTTCCACAGGTTGTTACAGGCTTAACAGGAAGCAACAATTTGACTTTTGTTGGCGGCAACATGTTTAAATCTATCCCTCAAGCTGATGGAGTTTTACTCAAGTGGGTTTTACATAACTGGAGCGATGATGATTGCATAAGGATACTCAAAAATTGTAAAGAAGCCATTTCGGGAAAAGGCAAAGGAGGAAAAGTGATCATCATAGACATTGTGATAAATGAAAAGCAAGATGAGCTTGGAATGACAGAAGTAAAGCTCTTGCTTGACATAGCTATGATGACAAGTCTCAATGGGAAAGAGAGAGATGAAAAAGATTGGAAGAGACTTTTCGACAAAGCAGGCTTCGAACATTACAAGATATTCCCCACTTTTGGATTTAGGTCTCTTATTGAGCTTTATCCATAA 1068 0.4082 MASTNDYKASELFQAQAHLYRMMYSFLNPMCIKWAIDLGIPDIIHNHPHPITLPELVSALNVPLSKATCVERLMRLLAHNDFFAIIKIDDTREAYALTPSSQLLVNGTDHCLSSMVHLLNSPTLVGSYHHLGKWTSGEDLTIVETALGPGGYWDFIHQNPTHLKTFNEAMESDSHVVRLALRDCKSVFEGLDSIVDVGGGTGNTAKIICEAFPNLKYIVLDLPQVVTGLTGSNNLTFVGGNMFKSIPQADGVLLKWVLHNWSDDDCIRILKNCKEAISGKGKGGKVIIIDIVINEKQDELGMTEVKLLLDIAMMTSLNGKERDEKDWKRLFDKAGFEHYKIFPTFGFRSLIELYP 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi82g00011 355 Gene3D Vaccinia Virus protein VP39 106 355 IPR029063 -
Gabi82g00011 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 353 IPR029063 -
Gabi82g00011 355 FunFam O-methyltransferase ZRP4 106 355 - -
Gabi82g00011 355 SUPERFAMILY "Winged helix" DNA-binding domain 10 107 IPR036390 -
Gabi82g00011 355 CDD AdoMet_MTases 194 293 - -
Gabi82g00011 355 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Gabi82g00011 355 Gene3D - 1 104 IPR036388 -
Gabi82g00011 355 PANTHER O-METHYLTRANSFERASE 11 340 IPR016461 GO:0008168
Gabi82g00011 355 FunFam Coniferyl alcohol 9-O-methyltransferase 2 104 - -
Gabi82g00011 355 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Gabi82g00011 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 355 IPR016461 GO:0008168
Gabi82g00011 355 Pfam O-methyltransferase domain 128 337 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi82g00011 Gabi-Chr82 117970 119223 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi82g00011 1 353 Monolignol Biosynthesis Gene Families AT5G54160 30.137 5.99e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi82g00011 K22588 - gmx:100818724 434.876