Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi82g00002 ATGGAGGGCGAGGCCGGTTCGGAGGGAGACAATAAGCGGAAAAGGGGTGGCGCAGATGATAACAGCAACGACAATAATGGAAGCAATAGCAAGATTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTTCAAAATCTCGAGAAAGCTTATGCTTTGGATACTTATCCTTCGGAGGCGATGAGATTAGAGTTGTCGGAAAAGTTGGGGTTGTCGGATCGGCAACTGCAGATGTGGTTCTGTCATAGGAGGTTGAAGGACAAGAAGGACTTGCCTTCCAAGAAACGGCCGCGGAAGGTGGCAGCAGAGCCTTTGCCAGATTCCCCCACAGATGACATGAGGTTGGACCCTGAACTTGGCAATGAGTATGGATCCGGGTCGGGTTCGGGGTCCAGCCCGCTTACCCGTTCTGAGTCCCGGAATGCGATGCCCCGTTATTATGAGTCCCCTCAGGCTGGAATGGAGCGTAGAGCAATTGCTTCTGTGGAGGCACAGTTAGGGGAGCCGTTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGACCCATTGCCACCAGATGCATTTGGGGCACCCATAGCAGTTACAGAACAGCGGAAGCGACCTAGTCTTGCCTATGACAGTAAAATATATGATAGGCATGATATGAGAGCAAATAAGGCTTTGGCAAGGACATTCCATGAATATCAATTTCTACCAAACCAGTCTGGCATTAGGACTGATGCTTTTGGACAGTTCAGCCAACCTCATTTACATGATCCAATGGAGGGTCCTGCCAGAAACCCTCCTTTTGTTCTTGGAAATGAACAGCCACCTAGAATTCATGCTACCAAAGGTCATTCTTCTCGTTCACAACAAGACAAGCAAGGGATTCCCTATCAGTCTCCTCCTGGAGATAAAGATGATGCCCCCCAAACGGAATTATACACAAACATAGCTAATATCGGAATGAACTCTCACTTTACTGATCACCAAATTGTTGGGCCAGAAAGTCCCTCTGCTTTACCTAGTGGACAAGTTTTGCCTAACAATATGCGGATCGAGAAGAAACGAAAGAGTGATGATGCCAGAATTACAAGGGAAGTTGAAGCCCATGAGATGAAGATCCGAAAAGAGCATGAGAAACAAGATAACCTTAGACGAAAGAGTGAAGAGCGAATGAAGAAAGAGATGGAGAGACAAGATCGTGAAAGGAGGAAGGAAGAAGAGAGGTTGATGCGTGAGAGACAACGTGAAGAGGAAAGAACAAAACGTGAGCAAAAACGTGAAATTGAACGAAGGGAAAAGCATTTGCTGAAGGAAAATTTAAGAGCTGAGAAATTGAGGCAAAAAGAAGAGCTTCGCAAAGAAAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATGGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATACGTCTTGATTTTGATACTTTGCAAAACCTTGAATCATATAAGGATTCATTGTGTCTTTTCCCACCCAAGAGTGTAAAGCTAAGAAAACTATTTGCTATACAACCCTGGATCAACTCTGAAGAGAATGTTGGTAACCTGCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGTTCTTTTACTCTCGATGAGTTTATGCAAGCAATTCACGACCATGATTCAAGACTGTTGGGTGAGATACATGTTGCTCTTCTTAAAGTGATAATAAAAGACATTGAGGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAATCAGAATGGTGCTGTTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGGTTTGACAAACGAAATTGGCGTAAGCACTTAAATCAGTTGACATGGCCGGAAATTCTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAATATTACACGGTCCTATGAAAAAGAAAAAGACGAGGGCAGAAGTTGCGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCCGAAAATGCAGTTGCAAAAATGCAGGAGAAAGGGCTATTAGCACCTCGAAGATCTAGGCATAGGTTAACTCCTGGAACAATTAAGTTTGCAGCATTTCATGTTCTCTCGCTTGAGGGTAGCAGGGGATTGACAGTACCAGAGCTCGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGATGCATCCATTTCTGTTGTTTTGACAAGAGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACGTATCGTGTTCTTTCTGCATTTAGAAAGGATCCTGCTGATGCTGAGTCCATTCTGTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGCTTCAAGCTGGGGAAGATGCTGATGATGTTGAAAGAGAAGCAGAGTCTGAAAGTGTTGAAGTTGATGAGGATCCTGAAGTTGATGATTTGGTAAATCCTTCAATTGCTAAAAAAACATCTGAACTGTGTGGTGATTTATCATCAAATGGAAAAGAAAATTTGGTTAATGATGTAGAACTTCAAGATGAGTTTGATAAGGACATGCCTTGTTTTCCTGAGAATGGTTCAAAGAATACTGATTGTCCAAGTACTGCCACTGGACAACCTGTTGCTTGTGAAGATCTTAGTGCTGGAAATCTTGGTGAAGATAATACGGAAATTGATGAAAGCAAGTCTGGACAATCATGGGTTCAAGGGCTTGCACAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTTTTGGTTGGTGTGGCAAACGAAGGAAATTCAATCCGTGTTGTTCTTAAGGATCGTTTGGAAGCATCAAATGCACTGAAGAAGCAAATGTGGGCAGAAGCACAGACAGACAAAGTTTGTCTGAAAGATGATATTTTTAATAAATTAGATTTTGCATCTATGGGTGGCAATAAAGTTGAAACACAAGACACATGTCCTATTGTGGAGGGCCACCAAAGTCCACTGCTTGACATTAATATTGACGCTAATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAAGCAGCTCCTGTTGCACAGAGCCTGTCTATTGAAACGCCCTCTTCAGTTCAAGATCTCTGTACAGGTCCAGATGACCCTCAGGCTCAGCTATCTGCACAATATTCAAAAAGGTCACGATCCGAGTTGAAATCTTATATTTCCCACATAGCGGAGGAGATGTATGTCTACAGATCCTTACCCCTTGGCCAAGATCGCCGACGTAATCGATATTGGCAATTTGTTGCAACTGCTTCTTGCAATGATGGCAGGATCTTTGTTGAATATCATGATGGAAATTGGAGGCTTATTGATTCTGAAGAGCTCGAAGGGCCTACACTGTTGAAGCACGGGTTCAATGATGCAATTGCTAAAGTAGGTATGGTCAAGTTCATCACAGATCTCTTCTGGGTTGGGATGTTTTACCACCTGTACAACCAGGTGGCGACTAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGCAACGTACTGAAACGTGTATTTGTGATTGTATTTTCAATTTTAGTCTTCGGTAACAAGATTTCCACCCAAACTGGTATTGGAACAGCCATTGCTATTGCAGGAGTGGCAATCTACTCGCTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAGAGAGTCTTGTTTCAATTGTTTTTTTACCACAACTGCATATTAAATTGGTTGAAACTTTAAAAGTTAATTTGCTTTGGCAAGTCACAAATAAACCACTTTTGGGCATATATGTTTTTAAACGGTGTACTTTTGAATGGATTTTACCTTGGTCTTCAAAATGCATTAGGCAATATAGCAATACACAAATAAAATTGACAAATTTTTCTTTTTGTTCTCTTGACAGCAAGCGAAAGCAGCATAAGAAGAAAGAGGCGTCAACTTGGAGGATGTCTTGA 4059 0.4294 MEGEAGSEGDNKRKRGGADDNSNDNNGSNSKIANSNEGQSKPKRQMKTPFQLQNLEKAYALDTYPSEAMRLELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKRPRKVAAEPLPDSPTDDMRLDPELGNEYGSGSGSGSSPLTRSESRNAMPRYYESPQAGMERRAIASVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIAVTEQRKRPSLAYDSKIYDRHDMRANKALARTFHEYQFLPNQSGIRTDAFGQFSQPHLHDPMEGPARNPPFVLGNEQPPRIHATKGHSSRSQQDKQGIPYQSPPGDKDDAPQTELYTNIANIGMNSHFTDHQIVGPESPSALPSGQVLPNNMRIEKKRKSDDARITREVEAHEMKIRKEHEKQDNLRRKSEERMKKEMERQDRERRKEEERLMRERQREEERTKREQKREIERREKHLLKENLRAEKLRQKEELRKEKEAERRKAALEKATARRMAKESMELIEDEQLELMELAASSKGFSSIIRLDFDTLQNLESYKDSLCLFPPKSVKLRKLFAIQPWINSEENVGNLLMVWRFLITFADVLELCSFTLDEFMQAIHDHDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAVNSGGGHPEIVEGAYAWGFDKRNWRKHLNQLTWPEILRQLALSAGYGPQLKKRNITRSYEKEKDEGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTIKFAAFHVLSLEGSRGLTVPELAEKIQKSGLRDLTTSKTPDASISVVLTRDAKLFERIAPSTYRVLSAFRKDPADAESILSEARKKIQIFENGLQAGEDADDVEREAESESVEVDEDPEVDDLVNPSIAKKTSELCGDLSSNGKENLVNDVELQDEFDKDMPCFPENGSKNTDCPSTATGQPVACEDLSAGNLGEDNTEIDESKSGQSWVQGLAQGEYSDLSVEERLNALVVLVGVANEGNSIRVVLKDRLEASNALKKQMWAEAQTDKVCLKDDIFNKLDFASMGGNKVETQDTCPIVEGHQSPLLDINIDANNNEASPSTAENQKAAPVAQSLSIETPSSVQDLCTGPDDPQAQLSAQYSKRSRSELKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVATASCNDGRIFVEYHDGNWRLIDSEELEGPTLLKHGFNDAIAKVGMVKFITDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIVFSILVFGNKISTQTGIGTAIAIAGVAIYSLIKARMEEEKRESLVSIVFLPQLHIKLVETLKVNLLWQVTNKPLLGIYVFKRCTFEWILPWSSKCIRQYSNTQIKLTNFSFCSLDSKRKQHKKKEASTWRMS 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi82g00002 1352 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1183 1252 - -
Gabi82g00002 1352 Coils Coil 441 472 - -
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 1 20 - -
Gabi82g00002 1352 Pfam HB1, ASXL, restriction endonuclease HTH domain 727 793 IPR007759 GO:0006355
Gabi82g00002 1352 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 23 1155 IPR044977 GO:0006357
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 253 313 - -
Gabi82g00002 1352 ProSiteProfiles DDT domain profile. 545 604 IPR018501 -
Gabi82g00002 1352 SUPERFAMILY Homeodomain-like 28 97 IPR009057 -
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 1040 1061 - -
Gabi82g00002 1352 CDD homeodomain 43 97 IPR001356 GO:0003677
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 21 51 - -
Gabi82g00002 1352 SMART testlast3 545 604 IPR018501 -
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 823 846 - -
Gabi82g00002 1352 SMART HOX_1 40 102 IPR001356 GO:0003677
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 829 846 - -
Gabi82g00002 1352 Pfam Triose-phosphate Transporter family 1172 1250 IPR004853 -
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 132 152 - -
Gabi82g00002 1352 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Gabi82g00002 1352 Gene3D - 24 99 - -
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 283 300 - -
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 1 51 - -
Gabi82g00002 1352 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 374 430 - -
Gabi82g00002 1352 ProSiteProfiles HARE-type HTH domain profile. 727 796 IPR007759 GO:0006355
Gabi82g00002 1352 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 933 973 IPR028942 -
Gabi82g00002 1352 Coils Coil 370 438 - -
Gabi82g00002 1352 MobiDBLite consensus disorder prediction 91 161 - -
Gabi82g00002 1352 Pfam DDT domain 546 601 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi82g00002 Gabi-Chr82 47 18449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi82g00002 4 1155 Homeobox Transcription Factor Family AT1G28420 52.654 0.0 1038
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi82g00002 TPT 8.5e-29 CL0184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi82g00002 - - gmx:100818817 1633.62