Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi82g00001 ATGGAGGGCGAGGCCGGTTCGGAGGGAGACAATAAGCGGAAAAGGGGTGGCGCAGATGATAACAGCAACGACAATAATGGAAGCAATAGCAAGATTGCGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTTCAAAATCTCGAGAAAGCTTATGCTTTGGATACTTATCCTTCGGAGGCGATGAGATTAGAGTTGTCGGAAAAGTTGGGGTTGTCGGATCGGCAACTGCAGATGTGGTTCTGTCATAGGAGGTTGAAGGACAAGAAGGACTTGCCTTCCAAGAAACGGCCGCGGAAGGTGGCAGCAGAGCCTTTGCCAGATTCCCCCACAGATGACATGAGGTTGGACCCTGAACTTGGCAATGAGTATGGATCCGGGTCGGGTTCGGGGTCCAGCCCGCTTACCCGTTCTGAGTCCCGGAATGCGATGCCCCGTTATTATGAGTCCCCTCAGGCTGGAATGGAGCGTAGAGCAATTGCTTCTGTGGAGGCACAGTTAGGGGAGCCGTTGAGGGAAGATGGACCCATTCTAGGAGTAGAGTTTGACCCATTGCCACCAGATGCATTTGGGGCACCCATAGTTACAGAACAGCGGAAGCGACCTAGTCTTGCCTATGACAGTAAAATATATGATAGGCATGATATGAGAGCAAATAAGGCTTTGGCAAGGACATTCCATGAATATCAATTTCTACCAAACCAGTCTGGCATTAGGACTGATGCTTTTGGACAGTTCAGCCAACCTCATTTACATGATCCAATGGAGGGTCCTGCCAGAAACCCTCCTTTTGTTCTTGGAAATGAACAGCCACCTAGAATTCATGCTACCAAAGGTCATTCTTCTCGTTCACAACAAGACAAGCAAGGGATTCCCTATCAGTCTCCTCCTGGAGATAAAGATGATGCCCCCCAAACGGAATTATACACAAACATAGCTAATATCGGAATGAACTCTCACTTTACTGATCACCAAATTGTTGGGCCAGAAAGTCCCTCTGCTTTACCTAGTGGACAAGTTTTGCCTAACAATATGCGGATCGAGAAGAAACGAAAGAGTGATGATGCCAGAATTACAAGGGAAGTTGAAGCCCATGAGATGAAGATCCGAAAAGAGCATGAGAAACAAGATAACCTTAGACGAAAGAGTGAAGAGCGAATGAAGAAAGAGATGGAGAGACAAGATCGTGAAAGGAGGAAGGAAGAAGAGAGGTTGATGCGTGAGAGACAACGTGAAGAGGAAAGAACAAAACGTGAGCAAAAACGTGAAATTGAACGAAGGGAAAAGCATTTGCTGAAGGAAAATTTAAGAGCTGAGAAATTGAGGCAAAAAGAAGAGCTTCGCAAAGAAAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATGGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATACGTCTTGATTTTGATACTTTGCAAAACCTTGAATCATATAAGGATTCATTGTGTCTTTTCCCACCCAAGAGTGTAAAGCTAAGAAAACTATTTGCTATACAACCCTGGATCAACTCTGAAGAGAATGTTGGTAACCTGCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGTTCTTTTACTCTCGATGAGTTTATGCAAGCAATTCACGACCATGATTCAAGACTGTTGGGTGAGATACATGTTGCTCTTCTTAAAGTGATAATAAAAGACATTGAGGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAATCAGAATGGTGCTGTTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGGTTTGACAAACGAAATTGGCGTAAGCACTTAAATCAGTTGACATGGCCGGAAATTCTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAATATTACACGGTCCTATGAAAAAGAAAAAGACGAGGGCAGAAGTTGCGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCCGAAAATGCAGTTGCAAAAATGCAGGAGAAAGGGCTATTAGCACCTCGAAGATCTAGGCATAGGTTAACTCCTGGAACAATTAAGTTTGCAGCATTTCATGTTCTCTCGCTTGAGGGTAGCAGGGGATTGACAGTACCAGAGCTCGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGATGCATCCATTTCTGTTGTTTTGACAAGAGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACGTATCGTGTTCTTTCTGCATTTAGAAAGGATCCTGCTGATGCTGAGTCCATTCTGTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGCTTCAAGCTGGGGAAGATGCTGATGATGTTGAAAGAGAAGCAGAGTCTGAAAGTGTTGAAGTTGATGAGGATCCTGAAGTTGATGATTTGGTAAATCCTTCAATTGCTAAAAAAACATCTGAACTGTGTGGTGATTTATCATCAAATGGAAAAGAAAATTTGGTTAATGATGTAGAACTTCAAGATGAGTTTGATAAGGACATGCCTTGTTTTCCTGAGAATGGTTCAAAGAATACTGATTGTCCAAGTACTGCCACTGGACAACCTGTTGCTTGTGAAGATCTTAGTGCTGGAAATCTTGGTGAAGATAATACGGAAATTGATGAAAGCAAGTCTGGACAATCATGGGTTCAAGGGCTTGCACAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTTTTGGTTGGTGTGGCAAACGAAGGAAATTCAATCCGTGTTGTTCTTAAGGATCGTTTGGAAGCATCAAATGCACTGAAGAAGCAAATGTGGGCAGAAGCACAGACAGACAAAGTTTGTCTGAAAGATGATATTTTTAATAAATTAGATTTTGCATCTATGGGTGGCAATAAAGTTGAAACACAAGACACATGTCCTATTGTGGAGGGCCACCAAAGTCCACTGCTTGACATTAATATTGACGCTAATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAAGCAGCTCCTGTTGCACAGAGCCTGTCTATTGAAACGCCCTCTTCAGTTCAAGATCTCTGTACAGGTCCAGATGACCCTCAGGCTCAGCTATCTGCACAATATTCAAAAAGGTCACGATCCGAGTTGAAATCTTATATTTCCCACATAGCGGAGGAGATGTATGTCTACAGATCCTTACCCCTTGGCCAAGATCGCCGACGTAATCGATATTGGCAATTTGTTGCAACTGCTTCTTGCAATGATGGCAGGATCTTTGTTGAATATCATGATGGAAATTGGAGGCTTATTGATTCTGAAGAGCTCGAAGGGCCTACACTGTTGAAGCACGGGTTCAATGATGCAATTGCTAAAGTAGGTATGGTCAAGTTCATCACAGATCTCTTCTGGGTTGGGATGTTTTACCACCTGTACAACCAGGTGGCGACTAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGCAACGTACTGAAACGTGTATTTGTGATTGTATTTTCAATTTTAGTCTTCGGTAACAAGATTTCCACCCAAACTGGTATTGGAACAGCCATTGCTATTGCAGGAGTGGCAATCTACTCGCTCATCAAAGCCAGGATGGAGGAAGAGAAGCGAGAGAGTCTTGTTTCAATTGTTTTTTTACCACAACTGCATATTAAATTGGTTGAAACTTTAAAAGTTAATTTGCTTTGGCAAGTCACAAATAAACCACTTTTGGGCATATATGTTTTTAAACGGTGTACTTTTGAATGGATTTTACCTTGGTCTTCAAAATGCATTAGGCAATATAGCAATACACAAATAAAATTGACAAATTTTTCTTTTTGTTCTCTTGACAGCAAGCGAAAGCAGCATAAGAAGAAAGAGGCGTCAACTTGGAGGATGTCTTGA 4056 0.4292 MEGEAGSEGDNKRKRGGADDNSNDNNGSNSKIANSNEGQSKPKRQMKTPFQLQNLEKAYALDTYPSEAMRLELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKRPRKVAAEPLPDSPTDDMRLDPELGNEYGSGSGSGSSPLTRSESRNAMPRYYESPQAGMERRAIASVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIVTEQRKRPSLAYDSKIYDRHDMRANKALARTFHEYQFLPNQSGIRTDAFGQFSQPHLHDPMEGPARNPPFVLGNEQPPRIHATKGHSSRSQQDKQGIPYQSPPGDKDDAPQTELYTNIANIGMNSHFTDHQIVGPESPSALPSGQVLPNNMRIEKKRKSDDARITREVEAHEMKIRKEHEKQDNLRRKSEERMKKEMERQDRERRKEEERLMRERQREEERTKREQKREIERREKHLLKENLRAEKLRQKEELRKEKEAERRKAALEKATARRMAKESMELIEDEQLELMELAASSKGFSSIIRLDFDTLQNLESYKDSLCLFPPKSVKLRKLFAIQPWINSEENVGNLLMVWRFLITFADVLELCSFTLDEFMQAIHDHDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAVNSGGGHPEIVEGAYAWGFDKRNWRKHLNQLTWPEILRQLALSAGYGPQLKKRNITRSYEKEKDEGRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTIKFAAFHVLSLEGSRGLTVPELAEKIQKSGLRDLTTSKTPDASISVVLTRDAKLFERIAPSTYRVLSAFRKDPADAESILSEARKKIQIFENGLQAGEDADDVEREAESESVEVDEDPEVDDLVNPSIAKKTSELCGDLSSNGKENLVNDVELQDEFDKDMPCFPENGSKNTDCPSTATGQPVACEDLSAGNLGEDNTEIDESKSGQSWVQGLAQGEYSDLSVEERLNALVVLVGVANEGNSIRVVLKDRLEASNALKKQMWAEAQTDKVCLKDDIFNKLDFASMGGNKVETQDTCPIVEGHQSPLLDINIDANNNEASPSTAENQKAAPVAQSLSIETPSSVQDLCTGPDDPQAQLSAQYSKRSRSELKSYISHIAEEMYVYRSLPLGQDRRRNRYWQFVATASCNDGRIFVEYHDGNWRLIDSEELEGPTLLKHGFNDAIAKVGMVKFITDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIVFSILVFGNKISTQTGIGTAIAIAGVAIYSLIKARMEEEKRESLVSIVFLPQLHIKLVETLKVNLLWQVTNKPLLGIYVFKRCTFEWILPWSSKCIRQYSNTQIKLTNFSFCSLDSKRKQHKKKEASTWRMS 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi82g00001 1351 ProSiteProfiles HARE-type HTH domain profile. 726 795 IPR007759 GO:0006355
Gabi82g00001 1351 ProSiteProfiles DDT domain profile. 544 603 IPR018501 -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 1 20 - -
Gabi82g00001 1351 SUPERFAMILY Homeodomain-like 28 97 IPR009057 -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 282 299 - -
Gabi82g00001 1351 CDD homeodomain 43 97 IPR001356 GO:0003677
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 21 51 - -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 252 313 - -
Gabi82g00001 1351 SMART HOX_1 40 102 IPR001356 GO:0003677
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 132 152 - -
Gabi82g00001 1351 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Gabi82g00001 1351 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 932 972 IPR028942 -
Gabi82g00001 1351 Coils Coil 369 437 - -
Gabi82g00001 1351 Gene3D - 24 99 - -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 1039 1060 - -
Gabi82g00001 1351 Coils Coil 440 471 - -
Gabi82g00001 1351 SMART testlast3 544 603 IPR018501 -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 91 162 - -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 1 51 - -
Gabi82g00001 1351 SUPERFAMILY Multidrug resistance efflux transporter EmrE 1182 1251 - -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 822 845 - -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 329 429 - -
Gabi82g00001 1351 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Gabi82g00001 1351 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 23 1154 IPR044977 GO:0006357
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 352 429 - -
Gabi82g00001 1351 MobiDBLite consensus disorder prediction 828 845 - -
Gabi82g00001 1351 Pfam HB1, ASXL, restriction endonuclease HTH domain 726 792 IPR007759 GO:0006355
Gabi82g00001 1351 Pfam Triose-phosphate Transporter family 1171 1249 IPR004853 -
Gabi82g00001 1351 Pfam DDT domain 545 600 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi82g00001 Gabi-Chr82 47 18449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi82g00001 4 1154 Homeobox Transcription Factor Family AT1G28420 52.557 0.0 1034
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi82g00001 TPT 8.5e-29 CL0184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi82g00001 - - gmx:100818817 1631.69