Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi824g00002 ATGGCAGAACCATCCACCGCCGAAACCACCTCCGCCAGCGATGCTCATCCGCCGGCGCCGGCGCCGGCTTCCTCGTCGCTCAACGTCGTCGGATTAACGAGCGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCGGCGACACTCCGTACACGTCAGCTACCACCTTCGAAGAATTGAATCTCTCACCGGAGCTTTTGAAGGGACTCTACGTGGAGATGAAGTTCCAGAAACCTAGTAAGATCCAAGCCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGATCGTACACGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACACGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGGGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGAATTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTAAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAATTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTGAATGACATTGTCCAGAATTTTGTTTCGAGGACAGTTAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAGCAATATAAAGTTCATTGTCCTGATGAACTCTCTAAGATTGAAGTGAAAAAAGAATACATACTCGAAATAGAAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGTCGCTCCTGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTGCAGGAGAATGCCCAGAGTTTGGCGGTCAACCCTTCTGCACCTGAAGTTATTCCTCCTAAACCAACGGCTTCTGGAAGGAAGAGGGTTGCTAGCGAGGATTTAAGCTCGCCTAAAGGAGCTAAAAGGGTTAGGGTGGAGCCGACTGAGTCTGGTCAATCAGGTGGTAGTCTCTCGTTTGCCATGGAGAGTTTCTGGCGGTGA 1287 0.4639 MAEPSTAETTSASDAHPPAPAPASSSLNVVGLTSDENKKPSPKFLDEPEDSNIQAVSSGDTPYTSATTFEELNLSPELLKGLYVEMKFQKPSKIQAVTLPMILNPPNRDLIVHAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYTGISSECAIPADSRDALPIAKRAPIMAQVVIGTPGTINKWMNYKKLGVTRLKILVFDEADQMLAKDGFKDDSLRIMKGIEKFNSNCQVLLFSATLNDIVQNFVSRTVKQDYNTLFVKELSLDAVKQYKVHCPDELSKIEVKKEYILEIEENLGQTIIFVRTRNSAKMLHKSLVVAPVVAPVAPSKGVDKGKRKVVNIVQENAQSLAVNPSAPEVIPPKPTASGRKRVASEDLSSPKGAKRVRVEPTESGQSGGSLSFAMESFWR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi824g00002 428 PANTHER RNA HELICASE 49 338 - -
Gabi824g00002 428 SMART ultradead3 87 291 IPR014001 -
Gabi824g00002 428 MobiDBLite consensus disorder prediction 393 407 - -
Gabi824g00002 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 272 IPR027417 -
Gabi824g00002 428 MobiDBLite consensus disorder prediction 1 64 - -
Gabi824g00002 428 CDD DEADc_DDX19_DDX25 74 273 - -
Gabi824g00002 428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 277 IPR014001 -
Gabi824g00002 428 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 96 IPR014014 GO:0003724
Gabi824g00002 428 Gene3D - 46 281 IPR027417 -
Gabi824g00002 428 Pfam DEAD/DEAH box helicase 93 264 IPR011545 GO:0003676|GO:0005524
Gabi824g00002 428 MobiDBLite consensus disorder prediction 372 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi824g00002 Gabi-Chr824 36348 40731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi824g00002 29 332 Eukaryotic Initiation Factors Gene Family AT1G72730 31.875 9.54e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi824g00002 K18655 - qsa:O6P43_010208 492.271