Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi824g00001 ATGATCGGTCAGATTGTGGGAACCCGGGAGGCTACTCTTGCTGTTGACAACCGTTGTTCTACCCAGCATGATGACTTGGTACAGAAAGGGCGCAAGATTGAGTCCTTAACGGCCGAGATCAGGCGGTTGGGTAAGGAAATTAGTGACCTGAAGGCAACCAATAAAACGCAGGAGAAGGATGACTTATCAAAGTTATTGGATGAGTCTTCAACCGAGAAAAAGGGGCTCCAGGCGGCGAATAGCCAGTTGACTGCCGAGAAAGCTGCCCTTCAGTCGGAGAAGGATGCGTTATCTGTTGAGTTGACTGGCGTATGTGGTAACTTGCATGCCGCCCAAGAGGATTTTAAAAAAGCTTCTGGGCGAGTACAGGAGCTGGAGCTTGCCTTGCCTTCAGTTTTTTATGATTCTTTTAACAACGCCCTGAATCAGGTTCAATTTCGATATCCTAAGATAGATGCTTCGGGCTTGAGTGCCGATTATGTGGTGGAAGGGAAACGCCTGCTTCATAAACTCTATAATGGCGAGACGACTGTGATACAGGAAGGGCCTGACTCTGATGAGGAAGAGGATGATGTAGAGGAAGAACCAGCCAAGTTCGGTGACTCACCTTTAGGCGACCACCATGTGCTGAGCGGAGAGCAACCCGTAGATGGCGAACCTACTGACGCCGTAGAGATCCGTAGAGATCCCGTCGTGCGGATCCCATCGTTGGCGATGGTGTTATTGGCAACACTTCCTTTGGAAGGTATTGGTGAGGAAGCTTCATCTAGGAATAACGTTGAAGACACTGCTGGGGAGGACGCCACTGAGGGGAAGCATGGTACTTTTCATTCATCTAGAAAGGAAGGCTTTTCGTTCATTATCAAAGCAGCCCAAGAACCTTCATCTTCTTCAACTGGGTTGCTTTCTCAAGCATTCTTACATATTTTTCAGGATAATCCTTTTAGGCCCAAGCTAAAAAATAGCAATGCACTTGAGTCTTTTGGCAGTCTGAGAAGTAAAAAGACATCAGCTAGATGGGATCCAGTTGAAGCATGTCGGCCTATTATTGATGAAGCCCCTGTGTTTTATCCGACTGTTGAAGAGTTTGAAGATACACTCAGTTACATAGCAAAGATACGTCCCCATGCTGAACCCTATGGCATATGTAGGATTGTCCCTCCACCTTGCTGGGTTCCACCTTGCCCTCTTAAGGAGAAGGATCTATGGGAAAATGCATAATTTCCCACCCGTACTCAGTATATTGATTTACTTCAAAATAGGGAACCTATGAGGAAAAAAAGTAGGGGAAAAAAACGAAAACGTAGAAAGCACTCCAAAACAGGCACATGCAGGAGTCTTGCCAATTCAGCTTCTGGAGCTAATAATGCTTCTGAATCTGATGAGAAATTTGGATTTCAATCAGGGTTGGACTTCACGCTTAAAGACTTTCAGCAATATGCTAATTTTTTTAAGGAATGCTACTTTGGTTTGAAAGATACCAATGAAGATGGAAAACTTAGTGATAGTAACCACCAAAAGAGAGGGGAGCCCTCTGAGGTGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACTAAGAGTGATTCAGATCAGTATGCCCTGTCTGGATGGAATCTAAATAACTTCCCGCGACTGCCAGGTTCTGTACTTAGTTTTGAAGGAAGCGACATCTCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGCTTTTCGTCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCGCTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGATGCCATGCTTCGGTTTTTGAAGATTCAATGAGGAAGAACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTCAATGAACTGGTTACTCAGTTATCTCCTTCAATTCATAAATCTGAGGGAGTTCCTGTGTATCGTACTGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGCTTCAATTGTGCAGAGGCAGTGAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTTGAGCTTTACAGTTTGCAATGCCGTAAGACATCATTGTCACACGACAAGCTGTTATTTGGATCAGCAAAGGAAGCTGTACGAGCCCTTGCACAGCTAGCTCTTTTTGGAAAGGAAACTCCAAAAAATTTGAATTGGAGAAGTGTGTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGAGTAAAGATGGAAGAAGAGAGGCTAAACTGTCTTCCAACTCATTTTAAGTTGCTGAATATGGACAGTGGGTTTGATTTGGACAAGGAGAGAGAATGCTTCTTTTGTTTCTATGACTTGCACCTATCTGCTGTAGGTTGTGATTGCTCTCCTGACAGATATTCTTGTCTTAAGCACACAAATTTGTTCTGCTCATGCGGAACGGACAAAAGATTTGTTCTGCTTCGATATACTATAAACGAGCTAAATAAATTGATTGAAGCATTAGGAGGAGAATTGCCTGCTATCGAGGTGTGGGCAAATAAAAACTTCGGAATGGTTTCTGCTGATGCCAATGAAGTTTGCATAGATAAATCAGTCATGGAGAGAGACATATACGAAACCAAGAGCCATGAAGAAGTGGAAATCTCAACTGGTACAAGAACCAGGTATTGTTCAAATTTAAATGTAACTGAGATTCCTTATATTGATAATAAGGTGGATAAGACAGCTTCTCTGGATTTAAATCTTGATGTTATGTCTGGTGAAAATGAAAACTGTTTGATGGATATTGCTGATAACCATCATATTAAGGGTGTTTCAGTAGAGGAAAAAGTATGTTGTTCAGAGGCCGGAAAGGAACAGGACAACATGGAACTTGGTGGTGACAGTATCCTATCACACTTGTCTTCTGTTGTGAAGACAGATTTTTCATCACGTACAAGGGATGTTCATAATTCTAGTACATTTGATGGTGGAAAATTTGCGGTGGATCTGCAAATGGATTCACATTCTGGAAAGCAGCCCAACAATGTATTGAAAAAGGAAGTCTCAGACACAACAAATACAAGTATATCTTTGGCAGGCGAAAGCTGCCTAATGCAAATGTTTGGTACTTCTGTCAAGCCTATAGGTTTGGGATCTGTTGTCCATGGAAAGCTGTGGTGCAGTAAGCACACAATATATCCAAGAGGTTTCAAGAGTCGAGTTAATTTCTTTAGCATTCTTGATCACAAGATGTGTAACTATATATCTGAAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACCTTGGAAGAATGTCCAAGTGAAGCTTTCACTGATACCTCAGCAGATAAGTGCTGGGAATCAGTTCTAAAGAGACTGCATCACGAAATAACTAGGCGAAGGAGTGTAGGTGAACTAGAACTTCCTCCCTTAGAGCTTCTAAAAAGCATTAACGGTCTTAGAATGTTTGGCTTCCTTTTACCATCCATTATTCAGGCCATTGAAGCTCAAGATCTCAGTCATCGGTGCGTAGAGTACTGGAATCACAAAGTTGTCCCTGCATCTTCAGGCAGGGTCATTGATAAGTTAACGTATGGTTCAAGTAGGTCTTTAGGTAATGTCAATACCAAAGTTTTTGGTATTAATTTGATAAAGCAGGAAAAGGATAACATAGGAGGAAGTTGCCATTCCCTTGTAGAGATGAAACCAATACTACAAAGGGCAAGTTCTGATGAGTTAAGCACAATGCAGAAGTTATTCAGCTCTGATGCACAATGTTCTCAGTGGAGAATGGCTTTGGTAGCACTGATTGATGAGATCCAGAAAGCTGGTGGATAA 3945 0.4248 MIGQIVGTREATLAVDNRCSTQHDDLVQKGRKIESLTAEIRRLGKEISDLKATNKTQEKDDLSKLLDESSTEKKGLQAANSQLTAEKAALQSEKDALSVELTGVCGNLHAAQEDFKKASGRVQELELALPSVFYDSFNNALNQVQFRYPKIDASGLSADYVVEGKRLLHKLYNGETTVIQEGPDSDEEEDDVEEEPAKFGDSPLGDHHVLSGEQPVDGEPTDAVEIRRDPVVRIPSLAMVLLATLPLEGIGEEASSRNNVEDTAGEDATEGKHGTFHSSRKEGFSFIIKAAQEPSSSSTGLLSQAFLHIFQDNPFRPKLKNSNALESFGSLRSKKTSARWDPVEACRPIIDEAPVFYPTVEEFEDTLSYIAKIRPHAEPYGICRIVPPPCWVPPCPLKEKDLWENAXFPTRTQYIDLLQNREPMRKKSRGKKRKRRKHSKTGTCRSLANSASGANNASESDEKFGFQSGLDFTLKDFQQYANFFKECYFGLKDTNEDGKLSDSNHQKRGEPSEVEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKTSSLTKSDSDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGCHASVFEDSMRKNLPDLFEEQPNLLNELVTQLSPSIHKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSAKEAVRALAQLALFGKETPKNLNWRSVCGKDGVLTKAVKTRVKMEEERLNCLPTHFKLLNMDSGFDLDKERECFFCFYDLHLSAVGCDCSPDRYSCLKHTNLFCSCGTDKRFVLLRYTINELNKLIEALGGELPAIEVWANKNFGMVSADANEVCIDKSVMERDIYETKSHEEVEISTGTRTRYCSNLNVTEIPYIDNKVDKTASLDLNLDVMSGENENCLMDIADNHHIKGVSVEEKVCCSEAGKEQDNMELGGDSILSHLSSVVKTDFSSRTRDVHNSSTFDGGKFAVDLQMDSHSGKQPNNVLKKEVSDTTNTSISLAGESCLMQMFGTSVKPIGLGSVVHGKLWCSKHTIYPRGFKSRVNFFSILDPXKMCNYISEVIDAGFLGPLFKVTLEECPSEAFTDTSADKCWESVLKRLHHEITRRRSVGELELPPLELLKSINGLRMFGFLLPSIIQAIEAQDLSHRCVEYWNHKVVPASSGRVIDKLTYGSSRSLGNVNTKVFGINLIKQEKDNIGGSCHSLVEMKPILQRASSDELSTMQKLFSSDAQCSQWRMALVALIDEIQKAGG 1315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi824g00001 1315 ProSiteProfiles JmjN domain profile. 353 394 IPR003349 -
Gabi824g00001 1315 SMART JmjN_1 352 393 IPR003349 -
Gabi824g00001 1315 PANTHER LYSINE-SPECIFIC DEMETHYLASE 348 995 - -
Gabi824g00001 1315 Pfam JmjC domain, hydroxylase 594 710 IPR003347 -
Gabi824g00001 1315 MobiDBLite consensus disorder prediction 425 442 - -
Gabi824g00001 1315 Coils Coil 66 100 - -
Gabi824g00001 1315 Coils Coil 26 60 - -
Gabi824g00001 1315 ProSiteProfiles JmjC domain profile. 561 727 IPR003347 -
Gabi824g00001 1315 Pfam F/Y-rich N-terminus 1083 1125 IPR003888 GO:0005634
Gabi824g00001 1315 SMART fyrn_3 1084 1128 IPR003888 GO:0005634
Gabi824g00001 1315 Gene3D - 1037 1214 - -
Gabi824g00001 1315 SMART cupin_9 561 727 IPR003347 -
Gabi824g00001 1315 Pfam C5HC2 zinc finger 817 869 IPR004198 -
Gabi824g00001 1315 MobiDBLite consensus disorder prediction 181 196 - -
Gabi824g00001 1315 FunFam Putative lysine-specific demethylase JMJ16 1076 1214 - -
Gabi824g00001 1315 SMART fyrc_3 1134 1226 IPR003889 GO:0005634
Gabi824g00001 1315 MobiDBLite consensus disorder prediction 259 276 - -
Gabi824g00001 1315 Gene3D Cupin 338 711 - -
Gabi824g00001 1315 MobiDBLite consensus disorder prediction 419 460 - -
Gabi824g00001 1315 Coils Coil 108 128 - -
Gabi824g00001 1315 Pfam jmjN domain 354 387 IPR003349 -
Gabi824g00001 1315 MobiDBLite consensus disorder prediction 254 276 - -
Gabi824g00001 1315 SUPERFAMILY Clavaminate synthase-like 562 747 - -
Gabi824g00001 1315 MobiDBLite consensus disorder prediction 177 221 - -
Gabi824g00001 1315 MobiDBLite consensus disorder prediction 443 460 - -
Gabi824g00001 1315 Pfam F/Y rich C-terminus 1132 1219 IPR003889 GO:0005634
Gabi824g00001 1315 ProSiteProfiles FYR domain FYRN motif profile. 1070 1128 IPR003888 GO:0005634
Gabi824g00001 1315 ProSiteProfiles FYR domain FYRC motif profile. 1130 1220 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi824g00001 Gabi-Chr824 24802 36198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi824g00001 325 898 JUMONJI Transcription Factor Family AT1G30810 62.457 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi824g00001 JmjC 2e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi824g00001 K11446 - gmx:100781830 1540.4