Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi820g00003 ATGAGCCTTGGAAGTAGAGGGAAATTGAAAGACACAAGTTTCTCAACATCAGCTGAAAGCAACATGAACACCAACACTGCCATCAATAGGGACAAGGCACTTGCTCAGTACAGTGCAGATGCTAAGATTCTGGCTGAGTTTGAGCAATCTGGTGTTTCTGGCAAATCATTTGATTACTCAAGGTCGGTTCTTGATCCTCCCAGGTTAGTGTCCGAGGAGAAAATGACTACATATTTGTCTAAAATCCAAAGGGGTGGTCTCATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAATCCACTTTTAAAATCATTGGATACAGTGAAAATTGCTTTCAATTGTTGGGTTTAGAGAGGAAAACTGATTCAGGACAGTTCACGGGTTTGATTGGGGTTGATGCCACAACCCTCTTCACTCCTGCTTCTGGGGCTTCCCTTGCAAAAGCTGTGGCTTCAAGGGAAATTTCGCTTTTGAACCCGATTTGGGTCTTTGCAAGGACAACCCAGAAGCCATTTTATGCCATACTGCACAGGATTGATGTTGGGGTTGTCATTGATTTGGAGCCTGCAAGGTCAAGTGATCCTGCATTATCACTTGCTGGGGCAGTTCAGTCACAGAAGTTGGCTGTTAGAGCAATTTCAAGGCTCCAATCTCTTCCTGGGGAAGATATTGGTTTGTTGTGTGACACTGTTGTTGAGGAAGTGCAGAAGCTTACAGGGTATGACAGGGTTATGGTTTATAAGTTCCATGAGGATGATCATGGTGAGGTTGTATCTGAGATTAGGAGGTCAGATTTAGAGCCTTACTTGGGTTTGCATTATCCTGCCACAGATATCCCTCAAGCTGCTCGCTTCTTGTTCAAGCAAAACCGGGTCAGGATAATTTGTGATTGCCATTCAAAGCCTGTTAAGGTCATTCAGAGTGAAGAGTTAAGGCAACCTCTTTGCTTGGTCAATTCAACCCTTAGGTCACCGCATGGTTGTCACAAACAGTACATGGCTAATATGGGCTCAATTGCCTCTCTGGTGATGGCAGTTATAGTCAATGGAAATGATACGACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCGCGCTATCTTCCTTTTCCAGTTCGGTATGCTTGTGAGTTCCTTATGCAGGCTTTTGGACTCCAGCTTTACATGGAGATTCAATTGGCATCACAGATGGCAGAGAAGAGAATTCTTAAAACACAAACCTTACTGTGTGACATGCTCCTACGTGATGCACCGTTTGGCATTGTGACCCAATCCCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCAGCCTTGTATTATGATGGAAACTGTTGGTTGTTAGGCACAACCCCAACTGAATCACAGGTGAAAGATATTGCAGAATGGCTACTTAATAATCATGGGGACTCAACAGGTTTGACCACAGATAGTTTGGCTGATGCAGGTTATCCAGGTGCTGCTTCACTGGGGGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAGACATTTCTTGTTCTGGTTCAGGTCGCACACAGCTAAGGAAATGAAATGGGGAGGAGCCAAGCATCATCCGGAGGATAAGGATGATGGAGGAAAATTGAACCCTAGATCATCATTTAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAACTAATAATGAGAGATTCATTCCAAGACACTGAAAACGCTGGCCCAAAGACTCTAAATTATATACATAAAAATGACACTGCAATGGGAGGGATGGATGAACTCAGTTCAGTAGCATTTGAAATGGTGAGATTAATCGAGACCGCAACAGTTCCAATTTTTGGGGTTGATTCAGGTGGCCTAATCAATGGATGGAATGCAAAAATTGCAGAATTGACAGGTCTGCAGGCCAGTGAAGCTATGGGTAAATCCCTAGTAAATGAAGTAGTACATGAGGACTCACATGAAACAATTAAAAACATTCTAAGCAGAGCCATGCAAGGCCAGGAGGACAAAAATGTTGAGTTGAAAATAAAACAATTTGGGTTTCATCAACCAAAGGAAGTTGTGTATATCATGGCCAATGCCTGCACTAGTAGGGACTACACAAATGCTATTGTTGGGGTATGCTTCGTAGGTCAGGACATCACTTATGAGAAAGTTGTTCTAGATAAATTCATTAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAATCCACTGATTCCACCCATATTTGCTTCTGATGAGAATGCTTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAGAAAGATGAAATCTTAGGAAAAATGCTTCCTGGCGAAATCTTTGGAAGTTTTTGTCGATTGAAAGGTCAAGATACACTGACTAATTTTATGATTATGCTGTATCGTGGAATGAGTGGTCAAGATTTGGAGAAGTTTCCATTTGGATTTTTTGATAGAAATGGAAAATTTATAGAGGCTTATATAACAGCAAACAAGAGGATTGATGCAGGTGGGAATATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCGACAGATTTGAATCAGCCCTCTGATGGACACAGGCCTCAGAGCCGAGAAAGCATATCTGAATCTAAGGAGTTGGCTTATATACGACAAGAGATGAAGAATCCTTTAAATGGTATACGATTCACACACAAACTTTTGGAAGATACAGCTGTCTCAGAAAACCAGAAACAATTTCTTGACACTAGTAATGCATGTGAAAGACAGATCATGGCAATTATTGGGGATACAGATTTAGGAAGTATTAATGAAGGCACTTTGCAGCTAAACATGGAAGAATTTCTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATCTTGATAAGAGAAAAAAGCTTGCAGCTGTTTCATGAAATTCCTGATGAAATCAAAACACTTGTTCTATATGGTGATCAAATTAAGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCGGCCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGCAATGAATTTGTCCATCTGAAGTTCAGGTACAAACACCAATATTTCATTTTACCATATTTTTCATGCAGAATGACACATTCTGGTCAAGGTCTTCCTTCCACTGTTCTTCATGATATGTTTGAAGGAGAGAATCAATGGACTACACAGGAAGGTCTAGGGCTATATATGTCCAGGAAAATCCTAAGTAAGATGAATGGTCATGTTCAGTATGTAAGAGAACACAATAAGTGCTATTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGAAATTTGCAAGCAGAGACAAGCATGTTAACTTTCTTCTCTTGA 3429 0.4106 MSLGSRGKLKDTSFSTSAESNMNTNTAINRDKALAQYSADAKILAEFEQSGVSGKSFDYSRSVLDPPRLVSEEKMTTYLSKIQRGGLIQPFGCMLAIEESTFKIIGYSENCFQLLGLERKTDSGQFTGLIGVDATTLFTPASGASLAKAVASREISLLNPIWVFARTTQKPFYAILHRIDVGVVIDLEPARSSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCHSKPVKVIQSEELRQPLCLVNSTLRSPHGCHKQYMANMGSIASLVMAVIVNGNDTTRLWGLLVCHHTSPRYLPFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDGNCWLLGTTPTESQVKDIAEWLLNNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSRHFLFWFRSHTAKEMKWGGAKHHPEDKDDGGKLNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIMRDSFQDTENAGPKTLNYIHKNDTAMGGMDELSSVAFEMVRLIETATVPIFGVDSGGLINGWNAKIAELTGLQASEAMGKSLVNEVVHEDSHETIKNILSRAMQGQEDKNVELKIKQFGFHQPKEVVYIMANACTSRDYTNAIVGVCFVGQDITYEKVVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGWKKDEILGKMLPGEIFGSFCRLKGQDTLTNFMIMLYRGMSGQDLEKFPFGFFDRNGKFIEAYITANKRIDAGGNMIGCFCFLQIVSTDLNQPSDGHRPQSRESISESKELAYIRQEMKNPLNGIRFTHKLLEDTAVSENQKQFLDTSNACERQIMAIIGDTDLGSINEGTLQLNMEEFLLGNILDAIVSQVMILIREKSLQLFHEIPDEIKTLVLYGDQIKLQVVLSDFLLNVVGHTPSPNGWVEIKISPGLKIIQDGNEFVHLKFRYKHQYFILPYFSCRMTHSGQGLPSTVLHDMFEGENQWTTQEGLGLYMSRKILSKMNGHVQYVREHNKCYFLIDLELRTRKERQRNLQAETSMLTFFS 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi820g00003 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 614 722 IPR035965 -
Gabi820g00003 1142 CDD PAS 619 726 IPR000014 -
Gabi820g00003 1142 Gene3D PAS domain 609 742 - -
Gabi820g00003 1142 ProSiteProfiles PAS repeat profile. 608 679 IPR000014 -
Gabi820g00003 1142 SMART gaf_1 223 403 IPR003018 GO:0005515
Gabi820g00003 1142 Gene3D - 926 1115 IPR036890 -
Gabi820g00003 1142 FunFam Phytochrome 755 863 - -
Gabi820g00003 1142 FunFam Phytochrome 398 528 - -
Gabi820g00003 1142 Pfam GAF domain 223 393 IPR003018 GO:0005515
Gabi820g00003 1142 FunFam Phytochrome 604 736 - -
Gabi820g00003 1142 CDD HisKA 883 938 IPR003661 GO:0000155|GO:0007165
Gabi820g00003 1142 Pfam PAS fold 742 861 IPR013767 GO:0006355
Gabi820g00003 1142 Pfam PAS fold 611 726 IPR013767 GO:0006355
Gabi820g00003 1142 Gene3D - 204 554 IPR029016 -
Gabi820g00003 1142 CDD HATPase_Phy-like 994 1121 IPR044767 -
Gabi820g00003 1142 Gene3D - 398 571 IPR043150 -
Gabi820g00003 1142 ProSiteProfiles PAS repeat profile. 742 794 IPR000014 -
Gabi820g00003 1142 Gene3D PAS domain 81 326 - -
Gabi820g00003 1142 SMART HisKA_10 883 947 IPR003661 GO:0000155|GO:0007165
Gabi820g00003 1142 Pfam His Kinase A (phospho-acceptor) domain 885 947 IPR003661 GO:0000155|GO:0007165
Gabi820g00003 1142 SUPERFAMILY GAF domain-like 401 579 - -
Gabi820g00003 1142 PIRSF Phytochrome_conventional 9 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gabi820g00003 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 756 858 IPR035965 -
Gabi820g00003 1142 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 995 1120 IPR003594 -
Gabi820g00003 1142 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 383 IPR016132 -
Gabi820g00003 1142 SUPERFAMILY GAF domain-like 203 389 - -
Gabi820g00003 1142 Pfam PAS fold 78 190 IPR013654 GO:0006355
Gabi820g00003 1142 CDD PAS 753 861 IPR000014 -
Gabi820g00003 1142 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Gabi820g00003 1142 MobiDBLite consensus disorder prediction 1 22 - -
Gabi820g00003 1142 SMART pas_2 741 811 IPR000014 -
Gabi820g00003 1142 SMART pas_2 610 677 IPR000014 -
Gabi820g00003 1142 Pfam Phytochrome region 406 581 IPR013515 GO:0006355|GO:0009584
Gabi820g00003 1142 SMART HKATPase_4 995 1123 IPR003594 -
Gabi820g00003 1142 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 192 IPR035965 -
Gabi820g00003 1142 PANTHER OS08G0260000 PROTEIN 74 944 - -
Gabi820g00003 1142 Gene3D PAS domain 755 867 - -
Gabi820g00003 1142 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 704 721 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 508 527 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 423 443 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 541 559 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 611 627 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 630 645 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 724 744 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355|GO:0009584
Gabi820g00003 1142 NCBIfam PAS domain S-box protein 615 730 IPR000014 -
Gabi820g00003 1142 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 941 1117 IPR036890 -
Gabi820g00003 1142 ProSiteProfiles Histidine kinase domain profile. 890 1123 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi820g00003 Gabi-Chr820 90966 96947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi820g00003 15 1123 Histidine Kinase Gene Family AT4G18130 63.393 0.0 1491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi820g00003 K12123 - gmx:100808192 1995.32