Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi817g00087 ATGGGTGTTTATGAACAAGGTTCTGATAATTCTGTTAGAAAGAGGAAAAGTAGGAGCAGAGGAGATGGGTCTAGATCCATAGCTGAGACTCTGTCAAAGTGGAAGGAATACAATGAGCATCTTTTCTCTGCAAAAGATGATGTTAAATCAACTCGTAAAGCCCCAGCCAAGGGTTCAAAGAAAGGGTGCATGAAAGGTAAGGGAGGACCTCAAAATTCACAGTGTAACTACAGAGGTGTTAGACAGAGGACATGGGGGAAATGGGTTGGTGAGATTAGGGAGCCAAATAGAGGAAGTAGGCTTTGGTTGGGCACCTTCTCTACAGCCCAAGAAGCTGCTCTTGCTTATGATGAAGCTGCTAGGGCCATGTATGGTCCTTGTGCACGTCTCAACTTCCCCCACATCTCAGATTATAATGCTATCAGAGAATCGTTGAAGGACTCTTCCTTGGTCTCAACTTCTTCTTGTTCTTCAGTGGCAACTCCTGCAGCCTCCGATACAACTACTATATCCAATCATTCAGAAGTTTGTGCGGCTGAGGATGCTAAGGAGAAACCTCGACCTGTCATTATGAACGATACGCTTAATGCTTGTCACAAAGCTTATGAATCTGCCTCACCAACTAGTAGAATGAAGCAAGAGCCTATGGATGAGCCTGGGGATCTGACTGACCCTGGTGGTGGGGAAATCCAACATGGAAGACCAGAAGGGACTTATGATGTCGGGCAGGTTGCCGAGGATGTAAATAAAGATCAGATGGATTTTTCGTGGATTGATGGCTTTGATTTTGATGGTGATTACTTGAAGAGCTTTTCTACGGATGAGTTATTTCAGGTGGATGAACTTTTGGGGCATATAGACAATAATCCAATTGATGACTCTGGGTTGATGCAAGGTTTGGATTTTGGACAAATGGGTTTTTCTGGGGACAGTAATTCTCAGGTTGAGATACCTTCAAGCTTCTTTTATGAATTGCAAAATCCAGATGCGAAGTTGCTGGGAAGTTTGCCCCATATGGAACAGACACCATCGGGTGTTGATTATGGATTAGATTTCTTAAAAACAGAAGAGCCAGGGGAATATAATGATGGAGGGGAAGAGCAGCGATTTCTTAATTTAGATAATGATCTGAACCATGATTCAAAAGGAATGCAAGCAAGGAAGGATGATTAA 1173 0.4322 MGVYEQGSDNSVRKRKSRSRGDGSRSIAETLSKWKEYNEHLFSAKDDVKSTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYNAIRESLKDSSLVSTSSCSSVATPAASDTTTISNHSEVCAAEDAKEKPRPVIMNDTLNACHKAYESASPTSRMKQEPMDEPGDLTDPGGGEIQHGRPEGTYDVGQVAEDVNKDQMDFSWIDGFDFDGDYLKSFSTDELFQVDELLGHIDNNPIDDSGLMQGLDFGQMGFSGDSNSQVEIPSSFFYELQNPDAKLLGSLPHMEQTPSGVDYGLDFLKTEEPGEYNDGGEEQRFLNLDNDLNHDSKGMQARKDD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi817g00087 390 MobiDBLite consensus disorder prediction 9 23 - -
Gabi817g00087 390 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Gabi817g00087 390 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Gabi817g00087 390 MobiDBLite consensus disorder prediction 1 27 - -
Gabi817g00087 390 CDD AP2 75 134 IPR001471 GO:0003700|GO:0006355
Gabi817g00087 390 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Gabi817g00087 390 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 351 - -
Gabi817g00087 390 Gene3D AP2/ERF domain 76 135 IPR036955 GO:0003700|GO:0006355
Gabi817g00087 390 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Gabi817g00087 390 MobiDBLite consensus disorder prediction 355 390 - -
Gabi817g00087 390 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Gabi817g00087 390 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Gabi817g00087 390 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Gabi817g00087 390 MobiDBLite consensus disorder prediction 47 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi817g00087 Gabi-Chr817 790713 793008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi817g00087 11 374 AP2-EREBP Transcription Factor Family AT2G40340 39.459 4.30e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi817g00087 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi817g00087 - K09286 gmx:100800134 575.474